Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D24
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68320-4|CAA92705.4|  448|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AL008881-4|CAH10844.2|  448|Caenorhabditis elegans Hypothetical ...    27   4.2  
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical ...    26   9.7  

>Z68320-4|CAA92705.4|  448|Caenorhabditis elegans Hypothetical
           protein W07A12.4 protein.
          Length = 448

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -3

Query: 420 PNREYKNLKTVYLLWAHNPTHLPYMIRNCSSRS*LEIRSYDRHETDFAWYRLHTNKM 250
           P  + K L +V+  +A    H P +I++C     LE  +    E +  W  LH ++M
Sbjct: 145 PVIDLKELFSVWFSYATKAYH-PSLIKSCMQAIALEFETLLTEEWEKDWQELHRDQM 200


>AL008881-4|CAH10844.2|  448|Caenorhabditis elegans Hypothetical
           protein W07A12.4 protein.
          Length = 448

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -3

Query: 420 PNREYKNLKTVYLLWAHNPTHLPYMIRNCSSRS*LEIRSYDRHETDFAWYRLHTNKM 250
           P  + K L +V+  +A    H P +I++C     LE  +    E +  W  LH ++M
Sbjct: 145 PVIDLKELFSVWFSYATKAYH-PSLIKSCMQAIALEFETLLTEEWEKDWQELHRDQM 200


>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
           protein F46F11.9b protein.
          Length = 1282

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 29  PNGGSSSKYPSTRLATPRTASQPVTTVGETQP 124
           PNG S+ + PS+  ++  T S  +  VG   P
Sbjct: 252 PNGASNQQSPSSPTSSVATISSTMPAVGSVSP 283


>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
           protein F46F11.9a protein.
          Length = 1280

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 29  PNGGSSSKYPSTRLATPRTASQPVTTVGETQP 124
           PNG S+ + PS+  ++  T S  +  VG   P
Sbjct: 252 PNGASNQQSPSSPTSSVATISSTMPAVGSVSP 283


>AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical
           protein Y17G9B.1 protein.
          Length = 480

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 419 PIESTRISKQSIYYGHITQPTCPI 348
           P+ S+ I++ S++YG+I Q  C I
Sbjct: 309 PLISSHITRLSVFYGYIEQVFCII 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,791,133
Number of Sequences: 27780
Number of extensions: 189754
Number of successful extensions: 446
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)