Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D24
         (422 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   7.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.5  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   10.0 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    20   10.0 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   10.0 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   10.0 

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -3

Query: 372 HNPTHLPYMIRNCSSRS*LEIRSYDRHETDFAWY 271
           + P   PY  RN S    L+    D+HE     Y
Sbjct: 3   NEPQECPYCRRNFSCYYSLKRHFQDKHEQSDTLY 36


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 321 MIVKNNYVSYRASGLG 368
           M VKNN+VS +  G G
Sbjct: 213 MGVKNNHVSSKVEGNG 228


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 158 RVTFAFFYPDVSAG 117
           R+T ++F PD  AG
Sbjct: 229 RITHSYFMPDPLAG 242


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 111 VKPSRNVGIEKSK 149
           V+P RNV IE++K
Sbjct: 240 VRPRRNVLIERAK 252


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 164 FSRVTFAFFYPDVSAGFHQPLSR 96
           F   + A+ + DVS  F +PL R
Sbjct: 488 FGPASPAYVHEDVSPTFEKPLVR 510


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 29  PNGGSSSKYPST 64
           P GGSSS  PS+
Sbjct: 84  PGGGSSSPSPSS 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,888
Number of Sequences: 438
Number of extensions: 2601
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)