Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D23
(415 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 39 3e-04
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 33 0.013
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 31 0.071
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 0.87
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 27 1.2
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 27 1.5
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 27 1.5
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 25 4.7
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 4.7
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 6.1
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 6.1
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 25 6.1
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 24 8.1
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 24 8.1
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 24 8.1
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 8.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 8.1
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 39.1 bits (87), Expect = 3e-04
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 102 YAWCQGCSHGGHLDHMRKWMEQYEVCPA-GCGHHCQL 209
+++C C HG H H +W + +CP C C+L
Sbjct: 868 FSFCLNCGHGAHASHASEWFSTHTICPVPNCDCECKL 904
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 33.5 bits (73), Expect = 0.013
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = +3
Query: 69 CSVCHTVVRGLYAWCQGCSHGGHLDHMRKWMEQ----YEVCPAGCGHHCQ 206
C+ C + GL C C H H D ++W + C +GCG CQ
Sbjct: 1265 CTFCCLSIHGLCIVCGLCLHVMHEDCYKEWFSNGDSISQSCSSGCGCKCQ 1314
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 31.1 bits (67), Expect = 0.071
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Frame = +3
Query: 69 CSVCHTVVRGLYAWCQGCSHGGHLDHMRKWM-----EQYEVCPA-GCG 194
C C +RG+ + C H GH +R W + VCP GCG
Sbjct: 789 CVYCELPLRGVLVYPPVCGHIGHESCLRSWYFDNTDDALPVCPVPGCG 836
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.5 bits (58), Expect = 0.87
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +3
Query: 69 CSVC-HTVVRGLYAW-CQGCSHGGHLDHMRKW 158
CSVC T+ W C C H HL +RKW
Sbjct: 197 CSVCTDTINPSTSIWSCGTCYHVFHLSCIRKW 228
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 27.1 bits (57), Expect = 1.2
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 69 CSVCHTVVRGLYAWCQGCSHGGHLDHMRKWMEQYEVCP 182
C +C G+Y W +G H DH+ + ++ E P
Sbjct: 1397 CPICMEQSGGIYPWQLRPRNGMHPDHISGFSKEVETDP 1434
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.6 bits (56), Expect = 1.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 63 DLCSVCHTVVRGLYAWCQGCSHGGHL 140
D CS C RGL+ C+GC HL
Sbjct: 118 DYCSACGG--RGLFICCEGCPCSFHL 141
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 26.6 bits (56), Expect = 1.5
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 120 CSHGGHLDHMRKWMEQYEVCP 182
C H H +R W+E+ + CP
Sbjct: 328 CGHILHFHCLRNWLERQQTCP 348
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 4.7
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 269 THRVYTSVISNGQRFQSLAEEIDLTLSYSTCYFYSLICLLKAHVILV 409
++ YT+ +S G+ S IDL + Y+ +Y+++ A++ +V
Sbjct: 63 SYTYYTTTLSIGRPSISYTVAIDLDMPYTWLTYYNVMAFNPAYLGIV 109
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 4.7
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 194 TPLPARVTTTHLHTLVPSQPPQLIITHRVYTSVISNGQRFQSLAEEI-DLTLSYSTCYFY 370
T P TTT T S+P + I T ++V +G S+ TLS +T +
Sbjct: 564 TTSPEETTTTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLS 623
Query: 371 S 373
S
Sbjct: 624 S 624
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 24.6 bits (51), Expect = 6.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 120 CSHGGHLDHMRKWMEQYEVCPAGCGHH 200
C H H + +WME +CP C H
Sbjct: 647 CHHLYHRQCLLQWMETRSICPV-CRCH 672
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 24.6 bits (51), Expect = 6.1
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -3
Query: 323 LMIGNVVRWK*HWYILCG 270
+ IGNV+ W +W+++ G
Sbjct: 408 IAIGNVMHWDSNWWLIIG 425
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 24.6 bits (51), Expect = 6.1
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = +3
Query: 120 CSHGGHLDHMRKWMEQYEVCP 182
C+H H + +W+ VCP
Sbjct: 74 CNHAFHFHCISRWLNTRNVCP 94
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 24.2 bits (50), Expect = 8.1
Identities = 13/48 (27%), Positives = 19/48 (39%)
Frame = +2
Query: 110 VPGLLARGTPRPHAQVDGAVRGVPGRVRTPLPARVTTTHLHTLVPSQP 253
+PG A + Q A + P RV P P T + T ++P
Sbjct: 368 IPGKAASPQVQQQQQTSSAQQQQPQRVEQPAPQTTQPTQVDTQQAAKP 415
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 24.2 bits (50), Expect = 8.1
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = +3
Query: 69 CSVCHTVVRGLYAWCQGCSHGGHLDH 146
C C L A C CS H DH
Sbjct: 49 CLTCQKASGSLNAVCYSCSISCHADH 74
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 24.2 bits (50), Expect = 8.1
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +3
Query: 90 VRGLYAWCQGCSHGGHLD 143
+ ++AW +G +H G LD
Sbjct: 340 IASIFAWTRGLAHRGRLD 357
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 24.2 bits (50), Expect = 8.1
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 333 SISLFHIVHVISIH 374
S SLFHI H+IS H
Sbjct: 167 SHSLFHISHLISFH 180
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.2 bits (50), Expect = 8.1
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = +2
Query: 173 GVPGRVRTPLPARVTTTHLHTLVPSQPPQLIITHRVYTSVISNGQRFQSLAEEIDLTLSY 352
GV + + +T ++ H + P I + ++TS+ S +R +I++TL
Sbjct: 2055 GVQSAIGNFVSTILTLSNTHPSIAGNP----IFNDIWTSIASWTERRLQSCSQIEVTLPC 2110
Query: 353 STCYF 367
C+F
Sbjct: 2111 VECFF 2115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,602,925
Number of Sequences: 5004
Number of extensions: 34139
Number of successful extensions: 97
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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