Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D23
(415 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 44 3e-05
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 37 0.007
AY204195-1|AAO39198.1| 364|Caenorhabditis elegans nuclear recep... 31 0.33
Z70287-2|CAA94298.2| 700|Caenorhabditis elegans Hypothetical pr... 29 1.3
AC024806-4|AAF59525.1| 192|Caenorhabditis elegans Hypothetical ... 29 1.3
Z93385-8|CAN86626.1| 560|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z93385-7|CAN86625.1| 556|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z93385-6|CAB07641.1| 558|Caenorhabditis elegans Hypothetical pr... 28 2.3
AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe... 28 2.3
AC006712-2|AAK39324.1| 754|Caenorhabditis elegans Hypothetical ... 28 3.1
Z81482-5|CAB03956.3| 409|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z70757-5|CAA94801.1| 110|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z46934-6|CAA87045.3| 371|Caenorhabditis elegans Hypothetical pr... 27 4.1
U72211-1|AAB97099.1| 409|Caenorhabditis elegans putative transc... 27 4.1
U64599-3|AAB04561.1| 120|Caenorhabditis elegans Hypothetical pr... 27 4.1
U53149-5|AAA96121.2| 427|Caenorhabditis elegans Hypothetical pr... 27 4.1
AB077287-1|BAB83695.1| 101|Caenorhabditis elegans RING-H2 finge... 27 4.1
Z81505-1|CAB04122.1| 673|Caenorhabditis elegans Hypothetical pr... 27 5.4
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z81504-1|CAB04116.1| 426|Caenorhabditis elegans Hypothetical pr... 26 9.4
U41037-3|AAA82389.1| 378|Caenorhabditis elegans Hypothetical pr... 26 9.4
U20861-13|ABD63242.1| 112|Caenorhabditis elegans Hypothetical p... 26 9.4
U20861-12|AAA62299.1| 403|Caenorhabditis elegans Hypothetical p... 26 9.4
AC024824-2|AAK85502.1| 740|Caenorhabditis elegans Hypothetical ... 26 9.4
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 44.4 bits (100), Expect = 3e-05
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 102 YAWCQGCSHGGHLDHMRKWMEQYEVCP-AGCGHHCQ 206
++ C C+HGGH++H+ W E + CP AGC CQ
Sbjct: 5016 FSICNICNHGGHVNHIATWFETEKYCPVAGCDCRCQ 5051
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 36.7 bits (81), Expect = 0.007
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 69 CSVCHTVVRGLYAWCQGCSHGGHLDHMRKWMEQYEVCP-AGCGHHC 203
C+VC + G+ C C H H DH +W ++ + C GC C
Sbjct: 790 CTVCRFGIVGMTFQCNVCGHCMHTDHAYQWFQKTKECAFVGCPCTC 835
>AY204195-1|AAO39198.1| 364|Caenorhabditis elegans nuclear receptor
NHR-109 protein.
Length = 364
Score = 31.1 bits (67), Expect = 0.33
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -2
Query: 297 EITLVYTLWVIISCGGCEGTSVCKCVVVTRAGSGVRTRPGTPR 169
EIT+V L V I C C + KC+ V GVR +PG+ R
Sbjct: 47 EITIVMLLLVNIRCM-CRACRLTKCIEVGMNPVGVRQKPGSFR 88
>Z70287-2|CAA94298.2| 700|Caenorhabditis elegans Hypothetical
protein R09E10.3 protein.
Length = 700
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 197 PLPARVTTTHLHTLVPSQPPQLIITHRVYTSVISNGQRFQSLAEEIDLTLSY-STCYFYS 373
P P + T + +P +++TH S + + F++ A D LSY + Y
Sbjct: 258 PTPETLATISFTSGTTGRPKGVMLTHLNMCSATMSCEEFENEAGVQDAYLSYLPLAHIYE 317
Query: 374 LICLLKAHVI 403
+CLL +I
Sbjct: 318 RLCLLSNFMI 327
>AC024806-4|AAF59525.1| 192|Caenorhabditis elegans Hypothetical
protein Y52E8A.2 protein.
Length = 192
Score = 29.1 bits (62), Expect = 1.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 111 CQGCSHGGHLDHMRKWMEQYEVCPA 185
C C HLD +W ++ VCPA
Sbjct: 154 CNSCRRRFHLDCASQWFKEKSVCPA 178
>Z93385-8|CAN86626.1| 560|Caenorhabditis elegans Hypothetical
protein M01E5.3c protein.
Length = 560
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 77 LPHGGARAVRVVPGLLARGTPRPHAQVDGAVRGVPG 184
+P +A ++P LL G +P DG VRG PG
Sbjct: 225 IPLNPDQARHIIPQLLNPGGAQPAPVQDGPVRGPPG 260
>Z93385-7|CAN86625.1| 556|Caenorhabditis elegans Hypothetical
protein M01E5.3b protein.
Length = 556
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 77 LPHGGARAVRVVPGLLARGTPRPHAQVDGAVRGVPG 184
+P +A ++P LL G +P DG VRG PG
Sbjct: 225 IPLNPDQARHIIPQLLNPGGAQPAPVQDGPVRGPPG 260
>Z93385-6|CAB07641.1| 558|Caenorhabditis elegans Hypothetical
protein M01E5.3a protein.
Length = 558
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 77 LPHGGARAVRVVPGLLARGTPRPHAQVDGAVRGVPG 184
+P +A ++P LL G +P DG VRG PG
Sbjct: 225 IPLNPDQARHIIPQLLNPGGAQPAPVQDGPVRGPPG 260
>AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform a protein.
Length = 691
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +2
Query: 80 PHGGARAVRVVPGLLARGTPRPHAQVDGAVRGVPGRVRTPLPARVTTTHLHTLVPSQPPQ 259
P G + V G + R P P V A P PLP +TT + T + PPQ
Sbjct: 275 PQGYSYYWHVDSGTIQRQPPPPVRDVTPARSPSP----PPLPPPITTANRETQADAPPPQ 330
Query: 260 LI 265
+I
Sbjct: 331 II 332
>AC006712-2|AAK39324.1| 754|Caenorhabditis elegans Hypothetical
protein Y119C1B.5 protein.
Length = 754
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 63 DLCSVCHTVVRGLYAWCQGCSHGGHLDHMRKWMEQYEVCP 182
D+C++C ++ A C H H +RKW+ VCP
Sbjct: 602 DVCAICFIEMKE-EARITPCKHYFHGPCLRKWLAVKMVCP 640
>Z81482-5|CAB03956.3| 409|Caenorhabditis elegans Hypothetical
protein C40H5.5 protein.
Length = 409
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 158 DGAVRGVPGRVRTPLPARVTTTHLHTLVPSQPPQ 259
+ AV VP V P P TTT P QPP+
Sbjct: 237 EAAVATVPAVVAPPPPPPTTTTAPPPAAPEQPPR 270
>Z70757-5|CAA94801.1| 110|Caenorhabditis elegans Hypothetical
protein ZK287.5 protein.
Length = 110
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Frame = +3
Query: 63 DLCSVCHT-VVRGLYAWCQ----GCSHGGHLDHMRKWMEQYEVCP 182
DLC C GL C C+H H + +W++ +VCP
Sbjct: 53 DLCIECQANQAAGLKDECTVAWGNCNHAFHFHCISRWLKTRQVCP 97
>Z46934-6|CAA87045.3| 371|Caenorhabditis elegans Hypothetical
protein ZK1320.7 protein.
Length = 371
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 312 KRCPLEITLVYTLWVIISCGGCEGT-SVCKCVVVTRAGSGVR 190
K+ P+++T Y W C EG VCK ++ A GVR
Sbjct: 137 KKIPIDVTDFYG-WTATMCAAGEGNFEVCKLLLEHGADPGVR 177
>U72211-1|AAB97099.1| 409|Caenorhabditis elegans putative
transcription factor TTX-3 protein.
Length = 409
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 158 DGAVRGVPGRVRTPLPARVTTTHLHTLVPSQPPQ 259
+ AV VP V P P TTT P QPP+
Sbjct: 237 EAAVATVPAVVAPPPPPPTTTTAPPPAAPEQPPR 270
>U64599-3|AAB04561.1| 120|Caenorhabditis elegans Hypothetical
protein F56B6.6 protein.
Length = 120
Score = 27.5 bits (58), Expect = 4.1
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Frame = -2
Query: 300 LEITLVYTLWVI-ISCGGCEGTSVC---KCVVVTRAGSGVRTRPGTPRTAPSTCACG--- 142
L L++++ V S G C S C CV+ +AGS V +P TAP C G
Sbjct: 5 LSTFLLFSVLVFKASSGACSSDSDCGGAPCVMDVKAGSHVCCKPKPGTTAPQ-CPGGMTY 63
Query: 141 RGVPRASSP 115
G+P P
Sbjct: 64 SGIPVLCDP 72
>U53149-5|AAA96121.2| 427|Caenorhabditis elegans Hypothetical
protein C24B5.1 protein.
Length = 427
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 231 CKCVVVTRAGSGVRTRPGTPRTAPST 154
C C+VV++ S ++ PG+P + +T
Sbjct: 261 CNCLVVSKLNSHIKKNPGSPAVSFNT 286
>AB077287-1|BAB83695.1| 101|Caenorhabditis elegans RING-H2 finger
protein Rbx1 protein.
Length = 101
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Frame = +3
Query: 63 DLCSVCHT-VVRGLYAWCQ----GCSHGGHLDHMRKWMEQYEVCP 182
DLC C GL C C+H H + +W++ +VCP
Sbjct: 44 DLCIECQANQAAGLKDECTVAWGNCNHAFHFHCISRWLKTRQVCP 88
>Z81505-1|CAB04122.1| 673|Caenorhabditis elegans Hypothetical
protein F16A11.1 protein.
Length = 673
Score = 27.1 bits (57), Expect = 5.4
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = -1
Query: 187 PAGHTSYCSIHLRMWSRCPPCEQP 116
P H +CS M CP C +P
Sbjct: 578 PCNHDGFCSDCCNMMDHCPLCRKP 601
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 27.1 bits (57), Expect = 5.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 213 TRAGSGVRTRPGTPRTAPSTCACGRGVPRASSPGT 109
T +GS V T PG T+ ST + G +S P T
Sbjct: 531 TTSGSTVSTTPGASTTSGSTQSTTSGPSTSSGPST 565
>Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical
protein F55A11.3 protein.
Length = 610
Score = 26.6 bits (56), Expect = 7.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 120 CSHGGHLDHMRKWMEQYEVCP 182
CSH H +R W ++ + CP
Sbjct: 310 CSHVFHAHCLRSWFQRQQTCP 330
>Z81504-1|CAB04116.1| 426|Caenorhabditis elegans Hypothetical
protein F15H9.1 protein.
Length = 426
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +3
Query: 174 VCPAGCGHHCQLG*PLHTYTHWYLHNLRNLLLPTEYIPVL 293
VCP G G HC P + H N L + + P+L
Sbjct: 126 VCPNGKGKHCPPSIPKKAWLHGICKNNIKKLFSSIHTPML 165
>U41037-3|AAA82389.1| 378|Caenorhabditis elegans Hypothetical
protein T24C12.1 protein.
Length = 378
Score = 26.2 bits (55), Expect = 9.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 187 PAGHTSYCSIHLRMW 143
P GH++ C IHL+ W
Sbjct: 228 PTGHSNDCYIHLKRW 242
>U20861-13|ABD63242.1| 112|Caenorhabditis elegans Hypothetical
protein C28H8.11c protein.
Length = 112
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 243 LHNLRNLLLPTEYIPVLFP 299
L NL L+P EYIP+L P
Sbjct: 73 LFNLSTWLIPREYIPMLSP 91
>U20861-12|AAA62299.1| 403|Caenorhabditis elegans Hypothetical
protein C28H8.11a protein.
Length = 403
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 243 LHNLRNLLLPTEYIPVLFP 299
L NL L+P EYIP+L P
Sbjct: 364 LFNLSTWLIPREYIPMLSP 382
>AC024824-2|AAK85502.1| 740|Caenorhabditis elegans Hypothetical
protein Y55B1BR.2 protein.
Length = 740
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 140 RPHAQVDGAVRGVPGRVRTPLPARVTTTHLHTLVPSQPPQLIITH 274
+P + +++G+ G RT P+ VPS+PP + TH
Sbjct: 316 KPANKTVQSLQGLQGSSRTMSPSPRNIRSTTPSVPSRPPSALSTH 360
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,407,614
Number of Sequences: 27780
Number of extensions: 220177
Number of successful extensions: 812
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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