Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D22
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    27   2.2  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.2  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   2.9  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   5.1  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.7  
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    25   8.9  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    25   8.9  

>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 177 GIWYVIQKTSTASNCITYNFTRTNEPGKYNLEQL 278
           GIW +I +    S+C  Y++T  ++   Y  + L
Sbjct: 118 GIWEIIDRHINLSDCSVYSYTPDSDSDPYGDDAL 151


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/48 (20%), Positives = 28/48 (58%)
 Frame = +3

Query: 141 EPMPGFEMHRLLGIWYVIQKTSTASNCITYNFTRTNEPGKYNLEQLSQ 284
           EP+  FE+++L   +Y++ + +TA+       T++ +    ++E+ ++
Sbjct: 8   EPLVKFELYQLKKCYYIVSENATATIFRILKITQSEDELSISIEEAAK 55


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 20/69 (28%), Positives = 26/69 (37%)
 Frame = +2

Query: 23   FGIV*YIIKNVQTNASNCAVRCLWSRLWAYIPPGSVPHCGTDAGI*NAQVTRHMVRYTED 202
            FGI+   +     N  N    C   R+W  +P   VP    D    N Q+T      T  
Sbjct: 879  FGIIPKSLSQEMNNDENDGKSCFVLRIWNMLPETGVPILVADI---NPQMTSSSSNETSH 935

Query: 203  FDSIELHNL 229
                ELH+L
Sbjct: 936  LIQ-ELHSL 943


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 150 PGFEMHRLLGIWYVIQKTSTASNCITYNFTRTNEPGKYNLEQLSQHFILGLTPLKHDYR 326
           PG+  H +   W    K +  SN I       +E GKYN   ++  +  G + +  DYR
Sbjct: 196 PGWAHHSIFLDW---SKRNLDSNVIN---VEDSESGKYNALTITNSYDAGPSSVSTDYR 248


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 106 GIHTTWERAPLWNRCRDLKCTGYSAY 183
           GIH T+ R  LW  C  L    +S Y
Sbjct: 86  GIHYTYSRERLWGTCVILSTLFWSYY 111


>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 180 IWYVIQKTSTASNCITYNFTRTNEPGKYNLEQLSQHF 290
           I + I      ++ +T N    N+ G YNL  L++HF
Sbjct: 223 IMHKIDAIVVGADRVTRNGDTANKIGTYNLAILAKHF 259


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 94  PQTPNSTVRSVSLYIFND--ILNYTEHYRRL 8
           P+ P++T +  S+Y FN+  +L+Y    R L
Sbjct: 96  PKKPHTTPKPASIYTFNELVVLDYPHKDRAL 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,262
Number of Sequences: 5004
Number of extensions: 44240
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)