Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D22
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0576 + 19638725-19638779,19638988-19639144,19639871-196401...    32   0.31 
05_07_0227 - 28523385-28524278                                         32   0.31 
01_06_0038 - 25819433-25820344                                         31   0.55 
10_01_0360 - 3970796-3971248,3972080-3972436                           30   1.3  
02_05_0177 + 26505956-26506202,26506838-26507247,26507448-265076...    28   5.1  

>07_03_0576 +
           19638725-19638779,19638988-19639144,19639871-19640113,
           19640267-19640801,19640897-19641054,19641194-19641626
          Length = 526

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 20/109 (18%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
 Frame = +3

Query: 165 HRLLGIWYVIQKTSTASNCITYNFTRTNEPGKYNLEQLSQHFILGLTPLKHDYRYSGVLT 344
           ++ L +W V ++       +       +E G Y+++Q+ + +   ++ + H+    G L 
Sbjct: 122 YKKLNVWIVKERIKCCVRSMAVELFNQHEEGNYSMDQIPEDWRSLMSLMLHNPHEHGYLI 181

Query: 345 VP-DPAVPAQMRVRFPLSVAGSASYTVLATDYLSYAAVFTCQKLAYAHR 488
               P +P + R+ F         + +  T+  +Y  +   +KL Y +R
Sbjct: 182 CNYAPLIPIENRILFYFKAYEHMRFVLAYTNDAAYRDIL--KKLPYQNR 228


>05_07_0227 - 28523385-28524278
          Length = 297

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 126 LPGGMYAHKRLHRHLTAQLEALVCTFLMIY*TIPNTTVV 10
           L G +Y H+R H HL  QL+   C  L++    P   +V
Sbjct: 121 LTGTLYGHRRGHVHLAFQLDPRACPALLLELAAPTAALV 159


>01_06_0038 - 25819433-25820344
          Length = 303

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 126 LPGGMYAHKRLHRHLTAQLEALVCTFLMIY*TIPNTTVV 10
           L G +Y H+R H HL  Q++   C  L++    P  ++V
Sbjct: 115 LTGTLYGHRRGHVHLAFQVDPRACPALLLELAAPTASLV 153


>10_01_0360 - 3970796-3971248,3972080-3972436
          Length = 269

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 156 IPASVPQWGTLPGGMYAHKRLHRH 85
           +PA+ PQWG      + H++LH H
Sbjct: 194 LPAAQPQWGLYQQQQHHHQQLHHH 217


>02_05_0177 +
           26505956-26506202,26506838-26507247,26507448-26507624,
           26507775-26507999,26508089-26508265,26508357-26508593,
           26508855-26508944,26509102-26509254
          Length = 571

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +3

Query: 330 SGVLTVPDPAVPAQMRVRFPLSVAGSASYTVLATDYLSYAAVFTCQKLAYAHRRSATI 503
           +G   V +    A++  RFP  V G+  YT  A + L+   VFT   L Y H  +A+I
Sbjct: 91  AGAACVLNALCYAELASRFPAVVGGAYLYTYAAFNELTAFLVFTQLMLDY-HIGAASI 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,413,930
Number of Sequences: 37544
Number of extensions: 296500
Number of successful extensions: 658
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)