Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D22
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr...    29   2.0  
X86403-1|CAA60157.1|  575|Caenorhabditis elegans nicotinic acety...    29   2.6  
U23525-1|AAK71377.1|  575|Caenorhabditis elegans Acetylcholine r...    29   2.6  
Z75714-2|CAB00059.1|  474|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine re...    28   4.6  
AL034393-17|CAA22315.1|  503|Caenorhabditis elegans Hypothetical...    27   8.0  

>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical protein
            R09H10.5 protein.
          Length = 1603

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 213  SNCITYNFTRTNEPGKYNLEQL 278
            + C T+NF  T++P +YN +Q+
Sbjct: 1130 TTCNTWNFVETHDPREYNFQQI 1151


>X86403-1|CAA60157.1|  575|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 575

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 261 YNLEQLSQHFILGLTPLK-HDYRYSGVLTVPDPAVPAQM 374
           YN E++  H+   +  ++ HDY YSG+  V D  VP Q+
Sbjct: 208 YNSEEVRLHWYNNIQAVQLHDYSYSGIWDVID--VPGQL 244


>U23525-1|AAK71377.1|  575|Caenorhabditis elegans Acetylcholine
           receptor protein 2 protein.
          Length = 575

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 261 YNLEQLSQHFILGLTPLK-HDYRYSGVLTVPDPAVPAQM 374
           YN E++  H+   +  ++ HDY YSG+  V D  VP Q+
Sbjct: 208 YNSEEVRLHWYNNIQAVQLHDYSYSGIWDVID--VPGQL 244


>Z75714-2|CAB00059.1|  474|Caenorhabditis elegans Hypothetical
           protein ZC434.3 protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 318 DYRYSGVLTVPDPAVPAQMRVRFPLSVAGSASYTVLATDY 437
           DY + G    P P  P+ + VRFP+S A +     L   Y
Sbjct: 192 DYLFDGGFDFPIPLAPSGVGVRFPMSGAVNVGTDPLLITY 231


>AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 5 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 102 YGHTYHLGACPIVEPMPGFEMHRLLGIWYVIQKTSTASN 218
           Y + YH     IVE +P      LL   Y+I K  T SN
Sbjct: 56  YTNQYHRNLAMIVEQLPNQYFPSLLARMYMIYKQLTISN 94


>AL034393-17|CAA22315.1|  503|Caenorhabditis elegans Hypothetical
           protein Y18D10A.23 protein.
          Length = 503

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 120 LGACPIVEPMPGFEMHRLLGIWYVIQKTSTASNCITYNF 236
           L A  I +  P  E   L  +WY   K   A NCI+  F
Sbjct: 404 LKAGTIQQNSPDVETATLADVWYYTPKLLLAFNCISLTF 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,410,183
Number of Sequences: 27780
Number of extensions: 261971
Number of successful extensions: 563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)