Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D22
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.1  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   1.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   1.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   1.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   1.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.5  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   5.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 92  WSRLWAYIPPGSVPHCGTD 148
           W+R   Y+P G++  CGTD
Sbjct: 190 WNR---YVPEGNMTACGTD 205


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 303 TPLKHDYRYSGVLTVPDPAVPAQMRVRFPLSVAGS 407
           TP+ H  +Y G +  P P+   + R    L V+GS
Sbjct: 32  TPVIHFLQYPGCVPKPIPSYACRGRCSSYLQVSGS 66


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 92  WSRLWAYIPPGSVPHCGTD 148
           W+R   Y+P G++  CGTD
Sbjct: 66  WNR---YVPEGNMTACGTD 81


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 44  IKNVQTNASNCAVRCLWSRLWAYIPPGSVPH 136
           IKNV  ++++   + L      Y+PP  +P+
Sbjct: 311 IKNVSRDSNSSDFKKLVDNWMTYMPPSGIPN 341


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 44  IKNVQTNASNCAVRCLWSRLWAYIPPGSVPH 136
           IKNV  ++++   + L      Y+PP  +P+
Sbjct: 311 IKNVSRDSNSSDFKKLIDNWMTYMPPSGIPN 341


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -3

Query: 290 EMLRQLFQIIFARFICPREIVSYAVRCCRSLLYNVPYAE*PVHFKSRHRFHNGARSQ 120
           E  R++  +     +  RE  +   R   +L+YN+       +F SR R H+   SQ
Sbjct: 726 EKSRRMLYLRGREVVAQRERAADMKRRNGALIYNILPPHVAAYFLSRARHHDDLYSQ 782


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 47  KNVQTNASNCAVRCLWSR 100
           K +  N S CA+RCL  R
Sbjct: 72  KWLSINHSACAIRCLAQR 89


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 157 NPGIGSTMGHAPRWYVCP*AAPQ 89
           N GIG  M  A R Y C    P+
Sbjct: 108 NTGIGLAMAAAVRGYKCIIVMPE 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,949
Number of Sequences: 438
Number of extensions: 3038
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)