Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D21
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0054 - 773395-774518,776957-777124,777455-778376                 30   1.4  
10_01_0057 + 797732-797793,797819-797914,798816-799012,799730-80...    29   1.8  
10_01_0299 - 3101028-3102022,3103004-3103177,3105272-3106190           28   4.2  
10_01_0293 + 3039945-3040857,3042457-3042630,3043562-3044556           28   4.2  
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805...    27   7.4  
10_01_0017 - 218188-218261,219262-219379,220348-220932,220996-22...    27   9.8  
07_01_0983 + 8287866-8287871,8289353-8289583,8289647-8290408           27   9.8  

>10_01_0054 - 773395-774518,776957-777124,777455-778376
          Length = 737

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 84  QNLTYLHSPLSHVIKNQQHKASILVRTDKLI 176
           + L Y+HS +SH I++   K + ++ TDK I
Sbjct: 528 EGLRYMHSSISHTIRHGDIKPANILLTDKFI 558


>10_01_0057 +
           797732-797793,797819-797914,798816-799012,799730-800892
          Length = 505

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 84  QNLTYLHSPLSHVIKNQQHKASILVRTDKLI 176
           + L Y+HS +SH I++   K + ++ TDK +
Sbjct: 283 EGLRYMHSSISHTIRHGDVKPANILLTDKFV 313


>10_01_0299 - 3101028-3102022,3103004-3103177,3105272-3106190
          Length = 695

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 84  QNLTYLHSPLSHVIKNQQHKASILVRTDKLIP 179
           + L Y+HS  S  I++   K + ++ TDK IP
Sbjct: 527 EGLRYMHSSTSRTIRHGDVKPANILLTDKFIP 558


>10_01_0293 + 3039945-3040857,3042457-3042630,3043562-3044556
          Length = 693

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 84  QNLTYLHSPLSHVIKNQQHKASILVRTDKLIP 179
           + L Y+HS  S  I++   K + ++ TDK IP
Sbjct: 525 EGLRYMHSSTSRTIRHGDVKPANILLTDKFIP 556


>03_06_0737 +
           35879723-35879990,35880105-35880201,35880464-35880591,
           35880686-35880767,35880855-35880918,35880930-35881022,
           35881120-35881178,35881391-35881826,35882050-35882120,
           35882201-35882351
          Length = 482

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 358 ITLIYTNK*HWSVCNVKIIYFFLLNRHECIHNTYIINPIFK 480
           + +I  N       NVK+     LN HE + N+Y++N I +
Sbjct: 215 VRMIEANFGQKEAINVKVSDICDLNPHEALGNSYVVNIIIR 255


>10_01_0017 -
           218188-218261,219262-219379,220348-220932,220996-221163,
           221331-221333
          Length = 315

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 84  QNLTYLHSPLSHVIKNQQHKASILVRTDKLIP 179
           + L Y+HS  +  I++   K + ++ TDK IP
Sbjct: 99  EGLRYMHSSTNRTIRHGDVKPANILLTDKFIP 130


>07_01_0983 + 8287866-8287871,8289353-8289583,8289647-8290408
          Length = 332

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 84  QNLTYLHSPLSHVIKNQQHKASILVRTDKLIP 179
           + L Y+HS  +  I++   K + ++ TDK IP
Sbjct: 121 EGLRYMHSSTNRTIRHGDVKPANILLTDKFIP 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,019,506
Number of Sequences: 37544
Number of extensions: 231422
Number of successful extensions: 407
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)