Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D21
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006801-2|AAF60751.1|  914|Caenorhabditis elegans Hypothetical ...    31   0.72 
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr...    28   3.8  

>AC006801-2|AAF60751.1|  914|Caenorhabditis elegans Hypothetical
           protein Y52D5A.1 protein.
          Length = 914

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 18/62 (29%), Positives = 35/62 (56%)
 Frame = -2

Query: 483 RFKNWIYDVGIVYTFMSIK*KKINNFDVTDTPMLFIRID*SNASRLIKY*YIF*RTSLDL 304
           +  N I+D+ ++Y F+     K+NN  + D P+++I ++ SN+   +   YIF + S  +
Sbjct: 546 KMSNSIFDLPVIYIFL-----KMNN-SIFDLPVIYIFLEMSNSIFDLPVIYIFLKMSNSI 599

Query: 303 ID 298
            D
Sbjct: 600 FD 601



 Score = 30.3 bits (65), Expect = 0.95
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = -2

Query: 483 RFKNWIYDVGIVYTFMSIK*KKINNFDVTDTPMLFIRID*SNASRLIKY*YIF*RTSLDL 304
           +  N I+D+ ++Y F+     K+NN  + D P+++I +  SN+   +   YIF + S  +
Sbjct: 48  KMNNSIFDLPVIYIFL-----KMNN-SIFDLPVIYIFLKMSNSIFKLPVIYIFLKMSNSI 101

Query: 303 ID 298
            D
Sbjct: 102 FD 103



 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = -2

Query: 483 RFKNWIYDVGIVYTFMSIK*KKINNFDVTDTPMLFIRID*SNASRLIKY*YIF*RTSLDL 304
           +  N I+D+ ++Y F+     K+NN  + D P+++I +  SN+   +   YIF + S  +
Sbjct: 144 KMSNSIFDLPVIYIFL-----KMNN-SIFDLPVIYIFLKMSNSIFDLPVIYIFLKMSNSI 197

Query: 303 ID 298
            D
Sbjct: 198 FD 199



 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = -2

Query: 483 RFKNWIYDVGIVYTFMSIK*KKINNFDVTDTPMLFIRID*SNASRLIKY*YIF*RTSLDL 304
           +  N I+D+ ++Y F+     K+NN  + D P+++I +  SN+   +   YIF + S  +
Sbjct: 304 KMNNSIFDLPVIYIFL-----KMNN-SIFDLPVIYIFLKMSNSIFDLPVIYIFLKMSNSI 357

Query: 303 ID 298
            D
Sbjct: 358 FD 359


>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical protein
            T01H10.8 protein.
          Length = 2692

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +2

Query: 344  INLEALL*SIRINNIGVSVTSKLFIFFYLIDMNVYTIPTS*IQFLNLLPV 493
            I  E +   I +NN G  V + + ++  +I+ N+Y+   + I  LNLLP+
Sbjct: 1270 ITAEKICYLIEVNNNGKVVGALIEMYEAIINHNIYSDKITKIVQLNLLPI 1319


>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical protein
            T01H10.8 protein.
          Length = 2692

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +2

Query: 344  INLEALL*SIRINNIGVSVTSKLFIFFYLIDMNVYTIPTS*IQFLNLLPV 493
            I  E +   I +NN G  V + + ++  +I+ N+Y+   + I  LNLLP+
Sbjct: 1270 ITAEKICYLIEVNNNGKVVGALIEMYEAIINHNIYSDKITKIVQLNLLPI 1319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,936,490
Number of Sequences: 27780
Number of extensions: 233873
Number of successful extensions: 395
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)