Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D21
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   4.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   4.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   4.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.2  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 98  PPLPPFPCHKKSTT*SV 148
           PPLPP P H +    SV
Sbjct: 439 PPLPPLPLHTECEDLSV 455


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 98  PPLPPFPCHKKSTT*SV 148
           PPLPP P H +    SV
Sbjct: 439 PPLPPLPLHTECEDLSV 455


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 536 NSSSHSGDYPEQTDRQAEDL 477
           N S +S  YP Q   Q EDL
Sbjct: 19  NRSFYSASYPPQNRSQEEDL 38


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 471 WIYDVGIVYTFMSIK*KKINNFDVTDTPML 382
           W+ D G+V     +   K+  FD+T + +L
Sbjct: 136 WVLDSGLVNNTQPMCSPKLLTFDLTTSQLL 165


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 471 WIYDVGIVYTFMSIK*KKINNFDVTDTPML 382
           W+ D G+V     +   K+  FD+T + +L
Sbjct: 136 WVLDSGLVNNTQPMCSPKLLTFDLTTSQLL 165


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 471 WIYDVGIVYTFMSIK*KKINNFDVTDTPML 382
           W+ D G+V     +   K+  FD+T + +L
Sbjct: 136 WVLDSGLVNNTQPMCSPKLLTFDLTTSQLL 165


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 510 PGTNRQTGRRFKNWIYDVGIVY 445
           P TNR TG+   +++ D  + Y
Sbjct: 717 PVTNRPTGQLLLDYLTDTVLAY 738


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,840
Number of Sequences: 438
Number of extensions: 3165
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)