Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D19
         (489 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23731-1|AAA70033.1|  414|Homo sapiens TAR DNA-binding protein-4...    69   1e-11
EF434183-1|ABO32292.1|  260|Homo sapiens TDP43 splice variant 2 ...    69   1e-11
EF434182-1|ABO32291.1|  414|Homo sapiens TDP43 splice variant 1 ...    69   1e-11
EF434181-1|ABO32290.1|  416|Homo sapiens TDP43 protein.                69   1e-11
CR533534-1|CAG38565.1|  414|Homo sapiens TARDBP protein.               69   1e-11
BC095435-1|AAH95435.1|  414|Homo sapiens TAR DNA binding protein...    69   1e-11
BC071657-1|AAH71657.1|  414|Homo sapiens TARDBP protein protein.       69   1e-11
AL109811-2|CAI22099.1|  295|Homo sapiens TAR DNA binding protein...    69   1e-11
AL109811-1|CAI22098.1|  414|Homo sapiens TAR DNA binding protein...    69   1e-11
AK222754-1|BAD96474.1|  414|Homo sapiens TAR DNA binding protein...    69   1e-11
AB065895-1|BAC06111.1|  313|Homo sapiens seven transmembrane hel...    30   3.7  

>U23731-1|AAA70033.1|  414|Homo sapiens TAR DNA-binding protein-43
           protein.
          Length = 414

 Score = 68.5 bits (160), Expect = 1e-11
 Identities = 29/54 (53%), Positives = 44/54 (81%)
 Frame = +2

Query: 326 MIEYVQVSESEHEESIELPTEEDGSLLMSTVCAQFPGASGLKYRSDGGGRLRGL 487
           M EY++V+E E++E IE+P+E+DG++L+STV AQFPGA GL+YR+     +RG+
Sbjct: 1   MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGV 54


>EF434183-1|ABO32292.1|  260|Homo sapiens TDP43 splice variant 2
           protein.
          Length = 260

 Score = 68.5 bits (160), Expect = 1e-11
 Identities = 29/54 (53%), Positives = 44/54 (81%)
 Frame = +2

Query: 326 MIEYVQVSESEHEESIELPTEEDGSLLMSTVCAQFPGASGLKYRSDGGGRLRGL 487
           M EY++V+E E++E IE+P+E+DG++L+STV AQFPGA GL+YR+     +RG+
Sbjct: 1   MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGV 54


>EF434182-1|ABO32291.1|  414|Homo sapiens TDP43 splice variant 1
           protein.
          Length = 414

 Score = 68.5 bits (160), Expect = 1e-11
 Identities = 29/54 (53%), Positives = 44/54 (81%)
 Frame = +2

Query: 326 MIEYVQVSESEHEESIELPTEEDGSLLMSTVCAQFPGASGLKYRSDGGGRLRGL 487
           M EY++V+E E++E IE+P+E+DG++L+STV AQFPGA GL+YR+     +RG+
Sbjct: 1   MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGV 54


>EF434181-1|ABO32290.1|  416|Homo sapiens TDP43 protein.
          Length = 416

 Score = 68.5 bits (160), Expect = 1e-11
 Identities = 29/54 (53%), Positives = 44/54 (81%)
 Frame = +2

Query: 326 MIEYVQVSESEHEESIELPTEEDGSLLMSTVCAQFPGASGLKYRSDGGGRLRGL 487
           M EY++V+E E++E IE+P+E+DG++L+STV AQFPGA GL+YR+     +RG+
Sbjct: 1   MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGV 54


>CR533534-1|CAG38565.1|  414|Homo sapiens TARDBP protein.
          Length = 414

 Score = 68.5 bits (160), Expect = 1e-11
 Identities = 29/54 (53%), Positives = 44/54 (81%)
 Frame = +2

Query: 326 MIEYVQVSESEHEESIELPTEEDGSLLMSTVCAQFPGASGLKYRSDGGGRLRGL 487
           M EY++V+E E++E IE+P+E+DG++L+STV AQFPGA GL+YR+     +RG+
Sbjct: 1   MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGV 54


>BC095435-1|AAH95435.1|  414|Homo sapiens TAR DNA binding protein
           protein.
          Length = 414

 Score = 68.5 bits (160), Expect = 1e-11
 Identities = 29/54 (53%), Positives = 44/54 (81%)
 Frame = +2

Query: 326 MIEYVQVSESEHEESIELPTEEDGSLLMSTVCAQFPGASGLKYRSDGGGRLRGL 487
           M EY++V+E E++E IE+P+E+DG++L+STV AQFPGA GL+YR+     +RG+
Sbjct: 1   MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGV 54


>BC071657-1|AAH71657.1|  414|Homo sapiens TARDBP protein protein.
          Length = 414

 Score = 68.5 bits (160), Expect = 1e-11
 Identities = 29/54 (53%), Positives = 44/54 (81%)
 Frame = +2

Query: 326 MIEYVQVSESEHEESIELPTEEDGSLLMSTVCAQFPGASGLKYRSDGGGRLRGL 487
           M EY++V+E E++E IE+P+E+DG++L+STV AQFPGA GL+YR+     +RG+
Sbjct: 1   MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGV 54


>AL109811-2|CAI22099.1|  295|Homo sapiens TAR DNA binding protein
           protein.
          Length = 295

 Score = 68.5 bits (160), Expect = 1e-11
 Identities = 29/54 (53%), Positives = 44/54 (81%)
 Frame = +2

Query: 326 MIEYVQVSESEHEESIELPTEEDGSLLMSTVCAQFPGASGLKYRSDGGGRLRGL 487
           M EY++V+E E++E IE+P+E+DG++L+STV AQFPGA GL+YR+     +RG+
Sbjct: 1   MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGV 54


>AL109811-1|CAI22098.1|  414|Homo sapiens TAR DNA binding protein
           protein.
          Length = 414

 Score = 68.5 bits (160), Expect = 1e-11
 Identities = 29/54 (53%), Positives = 44/54 (81%)
 Frame = +2

Query: 326 MIEYVQVSESEHEESIELPTEEDGSLLMSTVCAQFPGASGLKYRSDGGGRLRGL 487
           M EY++V+E E++E IE+P+E+DG++L+STV AQFPGA GL+YR+     +RG+
Sbjct: 1   MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGV 54


>AK222754-1|BAD96474.1|  414|Homo sapiens TAR DNA binding protein
           variant protein.
          Length = 414

 Score = 68.5 bits (160), Expect = 1e-11
 Identities = 29/54 (53%), Positives = 44/54 (81%)
 Frame = +2

Query: 326 MIEYVQVSESEHEESIELPTEEDGSLLMSTVCAQFPGASGLKYRSDGGGRLRGL 487
           M EY++V+E E++E IE+P+E+DG++L+STV AQFPGA GL+YR+     +RG+
Sbjct: 1   MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGV 54


>AB065895-1|BAC06111.1|  313|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 313

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +2

Query: 29  NNTITSFYIFAKVRDTKVLEAVFCRRGFSLLQASYILFYISN*VIVHDTLFR-TLHT-NE 202
           N T  + ++F  + D +VLE +F    F    A Y+L    N +I+  T+F  +LHT   
Sbjct: 5   NQTRVTEFVFLGLTDNRVLEMLF----FMAFSAIYMLTLSGNILIIIATVFTPSLHTPMY 60

Query: 203 FHL*NISQVE 232
           F L N+S ++
Sbjct: 61  FFLSNLSFID 70


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,438,946
Number of Sequences: 237096
Number of extensions: 912969
Number of successful extensions: 6016
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6016
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)