Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D19
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49910-6|CAH04715.1|  124|Caenorhabditis elegans Hypothetical pr...    49   2e-06
Z49910-5|CAA90120.1|  411|Caenorhabditis elegans Hypothetical pr...    49   2e-06
U41543-4|AAM69116.1|  575|Caenorhabditis elegans Hypothetical pr...    33   0.11 
U41543-3|AAB37024.1|  572|Caenorhabditis elegans Hypothetical pr...    33   0.11 
U14635-5|AAN63442.1|  464|Caenorhabditis elegans Hypothetical pr...    33   0.11 
U14635-4|AAL02446.1|  459|Caenorhabditis elegans Hypothetical pr...    33   0.11 
U14635-3|AAN63441.1|  491|Caenorhabditis elegans Hypothetical pr...    33   0.11 
U14635-2|AAC46656.2|  522|Caenorhabditis elegans Hypothetical pr...    33   0.11 
AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical ...    28   4.2  

>Z49910-6|CAH04715.1|  124|Caenorhabditis elegans Hypothetical
           protein F44G4.4b protein.
          Length = 124

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 24/52 (46%), Positives = 35/52 (67%)
 Frame = +2

Query: 332 EYVQVSESEHEESIELPTEEDGSLLMSTVCAQFPGASGLKYRSDGGGRLRGL 487
           E++ V +   +E IELPT  DG +LM+T+ A FPGA+GLKY++   G  R +
Sbjct: 46  EFITVQDPNGDEPIELPTV-DGVVLMTTLQASFPGATGLKYKNPKTGANRAV 96


>Z49910-5|CAA90120.1|  411|Caenorhabditis elegans Hypothetical
           protein F44G4.4a protein.
          Length = 411

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 24/52 (46%), Positives = 35/52 (67%)
 Frame = +2

Query: 332 EYVQVSESEHEESIELPTEEDGSLLMSTVCAQFPGASGLKYRSDGGGRLRGL 487
           E++ V +   +E IELPT  DG +LM+T+ A FPGA+GLKY++   G  R +
Sbjct: 46  EFITVQDPNGDEPIELPTV-DGVVLMTTLQASFPGATGLKYKNPKTGANRAV 96


>U41543-4|AAM69116.1|  575|Caenorhabditis elegans Hypothetical
           protein F46H5.7b protein.
          Length = 575

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 365 ESIELPTEEDGSLLMSTVCAQFPGASGLKYRSDG 466
           E +++  ++D +L  +TV +  PGA GL YR DG
Sbjct: 19  EPVQVSHDQDATLNFATVQSVVPGAHGLYYRDDG 52


>U41543-3|AAB37024.1|  572|Caenorhabditis elegans Hypothetical
           protein F46H5.7a protein.
          Length = 572

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 365 ESIELPTEEDGSLLMSTVCAQFPGASGLKYRSDG 466
           E +++  ++D +L  +TV +  PGA GL YR DG
Sbjct: 19  EPVQVSHDQDATLNFATVQSVVPGAHGLYYRDDG 52


>U14635-5|AAN63442.1|  464|Caenorhabditis elegans Hypothetical
           protein C27H5.2d protein.
          Length = 464

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 365 ESIELPTEEDGSLLMSTVCAQFPGASGLKYRSDG 466
           E +E+  +ED  +L +++   FPG SG+ YR  G
Sbjct: 17  EPVEVELDEDAGILWTSLQTAFPGCSGMYYREIG 50


>U14635-4|AAL02446.1|  459|Caenorhabditis elegans Hypothetical
           protein C27H5.2b protein.
          Length = 459

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 365 ESIELPTEEDGSLLMSTVCAQFPGASGLKYRSDG 466
           E +E+  +ED  +L +++   FPG SG+ YR  G
Sbjct: 17  EPVEVELDEDAGILWTSLQTAFPGCSGMYYREIG 50


>U14635-3|AAN63441.1|  491|Caenorhabditis elegans Hypothetical
           protein C27H5.2c protein.
          Length = 491

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 365 ESIELPTEEDGSLLMSTVCAQFPGASGLKYRSDG 466
           E +E+  +ED  +L +++   FPG SG+ YR  G
Sbjct: 17  EPVEVELDEDAGILWTSLQTAFPGCSGMYYREIG 50


>U14635-2|AAC46656.2|  522|Caenorhabditis elegans Hypothetical
           protein C27H5.2a protein.
          Length = 522

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 365 ESIELPTEEDGSLLMSTVCAQFPGASGLKYRSDG 466
           E +E+  +ED  +L +++   FPG SG+ YR  G
Sbjct: 17  EPVEVELDEDAGILWTSLQTAFPGCSGMYYREIG 50


>AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical
           protein F27B3.7 protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 117 YYKRAIYYSIYLT-R**CTIPFFELFIRT 200
           + K  IYYSI+ +    C IPFF++F  T
Sbjct: 72  FRKSLIYYSIFTSCHKKCAIPFFDIFTTT 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,246,283
Number of Sequences: 27780
Number of extensions: 146892
Number of successful extensions: 395
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)