Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D18
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    25   2.6  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   2.6  
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   6.0  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    24   7.9  

>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 105 SLLFVNVTNLTYLKKEGFN*RIRIVNNPGDNVV 203
           S+   N TN+TYL+   +N    +    GDNV+
Sbjct: 186 SVAINNFTNITYLRDNVWNLEHSVFAPHGDNVI 218


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 105 SLLFVNVTNLTYLKKEGFN*RIRIVNNPGDNVV 203
           S+   N TN+TYL+   +N    +    GDNV+
Sbjct: 186 SVAINNFTNITYLRDNVWNLEHSVFAPHGDNVI 218


>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 302 TSHYSTIVTLCHPLQYIY 249
           TSH STI  + H ++YIY
Sbjct: 26  TSHSSTIFCVHHRVRYIY 43


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 318 PPRHTDQPLQHHSH 277
           P  HT  P +HHSH
Sbjct: 368 PLLHTSMPSRHHSH 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,179,364
Number of Sequences: 5004
Number of extensions: 18168
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)