Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D18
         (353 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF226728-1|AAF35887.1| 1548|Homo sapiens somatostatin receptor-i...    29   4.1  
AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor i...    29   4.1  
BC013315-1|AAH13315.1|  352|Homo sapiens carbohydrate (chondroit...    28   7.2  
AJ289134-1|CAB92134.1|  347|Homo sapiens chondroitin 4-O-sulfotr...    28   7.2  
AJ269537-1|CAB87380.1|  352|Homo sapiens chondroitin-4-sulfotran...    28   7.2  
AF239820-1|AAF81691.1|  352|Homo sapiens chondroitin 4-O-sulfotr...    28   7.2  
AB042326-1|BAA95485.1|  352|Homo sapiens chondroitin 4-sulfotran...    28   7.2  

>AF226728-1|AAF35887.1| 1548|Homo sapiens somatostatin
           receptor-interacting protein splice variant b protein.
          Length = 1548

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 351 KDNSYTSRGPQPPRHTDQPLQHHSHPMP 268
           ++ S    GP PP H   P  HH H  P
Sbjct: 370 REKSLYHSGPLPPAHHHPPHHHHHHAPP 397


>AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor
            interacting protein splice variant a protein.
          Length = 2161

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 351  KDNSYTSRGPQPPRHTDQPLQHHSHPMP 268
            ++ S    GP PP H   P  HH H  P
Sbjct: 983  REKSLYHSGPLPPAHHHPPHHHHHHAPP 1010


>BC013315-1|AAH13315.1|  352|Homo sapiens carbohydrate (chondroitin
           4) sulfotransferase 11 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 350 KIIATLAEARSRRGTP-TSHYSTIVTLCHPLQYIYYN 243
           + +A L +  ++R  P   H+ T+ +LCHP  +I+Y+
Sbjct: 239 EFVAYLIDPHTQREEPFNEHWQTVYSLCHPC-HIHYD 274


>AJ289134-1|CAB92134.1|  347|Homo sapiens chondroitin
           4-O-sulfotransferase protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 350 KIIATLAEARSRRGTP-TSHYSTIVTLCHPLQYIYYN 243
           + +A L +  ++R  P   H+ T+ +LCHP  +I+Y+
Sbjct: 234 EFVAYLIDPHTQREEPFNEHWQTVYSLCHPC-HIHYD 269


>AJ269537-1|CAB87380.1|  352|Homo sapiens
           chondroitin-4-sulfotransferase protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 350 KIIATLAEARSRRGTP-TSHYSTIVTLCHPLQYIYYN 243
           + +A L +  ++R  P   H+ T+ +LCHP  +I+Y+
Sbjct: 239 EFVAYLIDPHTQREEPFNEHWQTVYSLCHPC-HIHYD 274


>AF239820-1|AAF81691.1|  352|Homo sapiens chondroitin
           4-O-sulfotransferase 1 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 350 KIIATLAEARSRRGTP-TSHYSTIVTLCHPLQYIYYN 243
           + +A L +  ++R  P   H+ T+ +LCHP  +I+Y+
Sbjct: 239 EFVAYLIDPHTQREEPFNEHWQTVYSLCHPC-HIHYD 274


>AB042326-1|BAA95485.1|  352|Homo sapiens chondroitin
           4-sulfotranseferase protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 350 KIIATLAEARSRRGTP-TSHYSTIVTLCHPLQYIYYN 243
           + +A L +  ++R  P   H+ T+ +LCHP  +I+Y+
Sbjct: 239 EFVAYLIDPHTQREEPFNEHWQTVYSLCHPC-HIHYD 274


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,577,121
Number of Sequences: 237096
Number of extensions: 650589
Number of successful extensions: 1621
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1621
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2075554296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)