Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D18
         (353 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    27   5.0  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    27   5.0  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U23514-8|AAC46540.2|  467|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U49955-1|AAA93430.1|  481|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical
           protein H03A11.2 protein.
          Length = 1218

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 323 RSRRGTPTSHYSTIVTL 273
           +S+R TPT HYSTI +L
Sbjct: 56  KSQRTTPTRHYSTISSL 72


>Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical
           protein H03A11.2 protein.
          Length = 1218

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 323 RSRRGTPTSHYSTIVTL 273
           +S+R TPT HYSTI +L
Sbjct: 56  KSQRTTPTRHYSTISSL 72


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 351  KDNSYTSRGPQPPRHTDQPLQHHSH 277
            KD+  + RGP P +  D+P++H S+
Sbjct: 3013 KDDD-SQRGPSPVKSEDEPVKHESY 3036


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 351  KDNSYTSRGPQPPRHTDQPLQHHSH 277
            KD+  + RGP P +  D+P++H S+
Sbjct: 3013 KDDD-SQRGPSPVKSEDEPVKHESY 3036


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 348 DNSYTSRGPQPPRHTDQPLQHHSHPMPS 265
           D+ Y S  PQ P H        S+P PS
Sbjct: 349 DSGYPSPAPQEPAHPSPSYPSPSYPSPS 376


>U23514-8|AAC46540.2|  467|Caenorhabditis elegans Hypothetical
           protein F48E8.2 protein.
          Length = 467

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 98  LIERERDSQRHTLYKSYY 45
           ++E  RD QRH +YK+ Y
Sbjct: 371 MVELTRDCQRHEIYKTQY 388


>U49955-1|AAA93430.1|  481|Caenorhabditis elegans Hypothetical
           protein C27D9.1 protein.
          Length = 481

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 290 CSGWSVCRGGCGPLL 334
           C+G +VC G C PLL
Sbjct: 184 CNGCAVCSGNCFPLL 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,484,991
Number of Sequences: 27780
Number of extensions: 102639
Number of successful extensions: 327
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)