Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D17
         (211 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    48   2e-07
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    48   2e-07
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    45   2e-06
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    27   0.45 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   3.2  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    23   4.2  
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    23   5.5  

>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 48.0 bits (109), Expect = 2e-07
 Identities = 21/41 (51%), Positives = 30/41 (73%)
 Frame = +3

Query: 78  SKAELACVYSALILVDDDVAVTGEKISTILKAAAVNVEPYW 200
           S +ELA  YSALIL D+ + +T +K+ ++ KAA V+VEP W
Sbjct: 2   SASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIW 42


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 48.0 bits (109), Expect = 2e-07
 Identities = 21/41 (51%), Positives = 30/41 (73%)
 Frame = +3

Query: 78  SKAELACVYSALILVDDDVAVTGEKISTILKAAAVNVEPYW 200
           S +ELA  YSALIL D+ + +T +K+ ++ KAA V+VEP W
Sbjct: 2   SASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIW 42


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 44.8 bits (101), Expect = 2e-06
 Identities = 19/41 (46%), Positives = 28/41 (68%)
 Frame = +3

Query: 78  SKAELACVYSALILVDDDVAVTGEKISTILKAAAVNVEPYW 200
           S +ELA  Y+ALIL D+ + +T +K+ ++ KA  V VEP W
Sbjct: 2   SASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIW 42


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 203 RPVRLNIYSSRFQYG*DFLTGNGDIVIYQDKGGVNTS 93
           +PV L   +++F +G   +T N D  I+  K G+N S
Sbjct: 66  KPVSLPASTTQFTFGKPAVTANNDSDIHLKKRGLNKS 102


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -1

Query: 190 STFTAAAFSMVEIFSPVTATSSSTRIRAE*TQANSAFDAILNVIRAS 50
           STF++ + S       V++TSSST   A  T  +S++ +  +V+ +S
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSS 219


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 42   FWRLARITFKMASKAELACVYSALILVDDDVAVTGEKISTIL 167
            FW ++     M S ++ +C Y++   V+D  A T  K   IL
Sbjct: 981  FWNVSDTLKNMFSTSDFSCAYNS---VEDLYAFTSMKSKEIL 1019


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/16 (62%), Positives = 13/16 (81%), Gaps = 2/16 (12%)
 Frame = +1

Query: 7   GSNVLVLPELM--PFG 48
           GSNV+VLPE+   P+G
Sbjct: 75  GSNVIVLPEIFNSPYG 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 772,540
Number of Sequences: 5004
Number of extensions: 11073
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)