Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D17
         (211 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    78   1e-15
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    74   1e-14
Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical pr...    27   1.4  
AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z81517-8|CAM84818.1|  357|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 35/46 (76%), Positives = 40/46 (86%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVNVEPYWPGL 209
           MAS  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V  EPYWPGL
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGL 46


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 34/46 (73%), Positives = 39/46 (84%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVNVEPYWPGL 209
           MAS  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V  EP WPGL
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGL 46


>Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical
           protein R07B7.11 protein.
          Length = 451

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +3

Query: 60  ITFKMA-SKAELACVYSALILVDDDVAVTGEKISTILK---AAAVNVEP 194
           IT  M+ S+  + C++SA +++ +D+ + G+    +LK   A  +N +P
Sbjct: 259 ITLDMSISQFTVWCIWSAPLIMSNDLRIIGDSFKDVLKNKEAIKINQDP 307


>AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical
           protein Y54E5A.4 protein.
          Length = 538

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 196 YGSTFTAAAFSMVEIFSPVTATSSSTRIRAE*TQANSAF 80
           +GST T  AFS   +F   T+T++S+      T   S F
Sbjct: 471 FGSTATKPAFSGGSLFGATTSTATSSAAATTTTPTTSLF 509


>Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical
           protein C01G10.7 protein.
          Length = 324

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 69  KMASKAELACVYSALILVDDDVAVTGEKISTILKAAAVNVEPY 197
           KM  K  +    S ++ ++D VA+T +  + +  AAA++  PY
Sbjct: 37  KMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 175  AAFSMVEIFSPVTATSSSTRIRAE*TQANSAFDAI 71
            A   M EIFSPV++T+   R  +   +  S +D I
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTI 2828


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 175  AAFSMVEIFSPVTATSSSTRIRAE*TQANSAFDAI 71
            A   M EIFSPV++T+   R  +   +  S +D I
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTI 2828


>Z81517-8|CAM84818.1|  357|Caenorhabditis elegans Hypothetical
           protein F28B1.9 protein.
          Length = 357

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 89  FSF*CHFKCYTCKSPKGISSGRTSTFDPR 3
           FS  C    Y+C  P+ +S GRT  F+ R
Sbjct: 145 FSLACVADSYSCDCPRILSDGRTG-FESR 172


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 96  CVYSALILVDDDVAVTGEKISTILKAAAVNVEPYWPGL 209
           C ++ L + DDD  +T +  + +L+   V+     PG+
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGV 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,291,693
Number of Sequences: 27780
Number of extensions: 62865
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)