Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D17
         (211 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   1.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   1.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   3.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   3.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 1.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 198 STAQHLQQPLSVWLRFSXXXXXXXHLPG*GRSKHKLIQLLM 76
           S++   ++P S+  R S        + G  + KHK+  LLM
Sbjct: 107 SSSSDDERPNSIHQRASFSLNTDGDIAGLRKKKHKVNPLLM 147


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 1.2
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 121 TRIRAE*TQANSAFDAILNVIRASRQKALAQG--EQARLTLV 2
           T  +A+ T+  S  DAIL++IR    + L Q   +QA+ T V
Sbjct: 172 TAYKADYTKI-STLDAILDIIRNMVPENLVQACFQQAQTTYV 212


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.8 bits (39), Expect = 3.7
 Identities = 8/30 (26%), Positives = 12/30 (40%)
 Frame = +3

Query: 3   TRVKRACSP*ANAFWRLARITFKMASKAEL 92
           T +     P  N  WR  R+T+   +   L
Sbjct: 45  TLISNDILPVCNGLWRWIRLTYGQTNHISL 74



 Score = 19.0 bits (37), Expect = 6.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 155 DFLTGNGDIVIYQD 114
           D L  N D+ +YQ+
Sbjct: 369 DVLLSNNDVYLYQN 382


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.8 bits (39), Expect = 3.7
 Identities = 8/30 (26%), Positives = 12/30 (40%)
 Frame = +3

Query: 3   TRVKRACSP*ANAFWRLARITFKMASKAEL 92
           T +     P  N  WR  R+T+   +   L
Sbjct: 83  TLISNDILPVCNGLWRWIRLTYGQTNHISL 112



 Score = 19.0 bits (37), Expect = 6.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 155 DFLTGNGDIVIYQD 114
           D L  N D+ +YQ+
Sbjct: 407 DVLLSNNDVYLYQN 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,128
Number of Sequences: 438
Number of extensions: 762
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3039192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)