Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D16
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   106   8e-25
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   106   8e-25
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   1.8  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    25   3.1  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    24   5.4  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    24   7.1  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    24   7.1  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    24   7.1  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    23   9.4  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    23   9.4  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    23   9.4  

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  106 bits (255), Expect = 8e-25
 Identities = 48/88 (54%), Positives = 61/88 (69%)
 Frame = +2

Query: 65  KRSAK*SVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKMFGGR 244
           KRS K + P  +D+VKT   KELAPYDPDW+YVR AAI RHIY+R  VGV  + K++GG 
Sbjct: 23  KRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGS 82

Query: 245 KRNGVTPSHFCRSSGSIARKALQALEAL 328
              G+ PSH    SGS+ RK +Q+LE +
Sbjct: 83  VNRGMRPSHHRDGSGSVQRKVVQSLEKI 110



 Score = 26.6 bits (56), Expect = 1.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 7  VTVKDVEQDKIVKTVAAHLKKIGKV 81
          V+VKDV+  + +   AA LK+ GK+
Sbjct: 4  VSVKDVDAQQFINAYAAFLKRSGKM 28


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  106 bits (255), Expect = 8e-25
 Identities = 48/88 (54%), Positives = 61/88 (69%)
 Frame = +2

Query: 65  KRSAK*SVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKMFGGR 244
           KRS K + P  +D+VKT   KELAPYDPDW+YVR AAI RHIY+R  VGV  + K++GG 
Sbjct: 23  KRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGS 82

Query: 245 KRNGVTPSHFCRSSGSIARKALQALEAL 328
              G+ PSH    SGS+ RK +Q+LE +
Sbjct: 83  VNRGMRPSHHRDGSGSVQRKVVQSLEKI 110



 Score = 27.9 bits (59), Expect = 0.44
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 7  VTVKDVEQDKIVKTVAAHLKKIGKV 81
          V+VKDV+  K +   AA LK+ GK+
Sbjct: 4  VSVKDVDAQKFITAYAAFLKRSGKM 28


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 221 QS*LQQESGYRCDAV*QHSVHKTNQGHR 138
           QS  +++SGY  D V   S H+T + HR
Sbjct: 90  QSFQREDSGYNDDVVTNSSSHRTPRHHR 117


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 176 ILRHIYIRSPVGVKTVTKMFGGRKRNGVTPSHFCRSSGSIARKA 307
           ++R+    S +G +++    GG    GVTPSH    S   A +A
Sbjct: 389 LMRNREQSSLLGQESIPLQPGGTGYTGVTPSHAANGSALAAPQA 432


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 93  IIWTW*RQLVSRNWL 137
           I W+W  QL++R W+
Sbjct: 177 ISWSWLLQLIARTWM 191


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 142 IGSQFLETSCLYQVHMIWNTSLCRSFSSERLQ 47
           I  +FLET+C+  + ++    L R     RLQ
Sbjct: 669 IDGRFLETACVTLIVVVVGLVLMRRHQQHRLQ 700


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 148 RVIGSQFLETSCLYQVHMIWNTSLCRSFSSERLQF 44
           ++ G   +  SCL  + ++W  SLC   S E  Q+
Sbjct: 349 KISGFSSIWRSCLEPLIILWPRSLCTEESCEFHQY 383


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 116 LSLPSPYDLEHFTLPI 69
           LSLP+PY +++ T P+
Sbjct: 167 LSLPTPYPVQYSTQPV 182


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 16  KDVEQDKIVKTVAAHLKKIGKVKCSRSYGL 105
           K  +QD  VK VA HL         R YG+
Sbjct: 440 KPGQQDNFVKNVAGHLSGAISPVRERQYGV 469


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 151  IRVIGSQFLETSCLYQVHMIWNTSLCRSFSSER 53
            +RV+G+  L+ + +Y  H+++  SL     S +
Sbjct: 1386 LRVLGTLLLQENRVYAAHLVYILSLSPDVCSNK 1418


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 54  RSLEKDRQSEVFQIIWTW*RQLVSRNWL 137
           R L++   S+ +++I+ W   L  R WL
Sbjct: 292 RCLKESESSDAYKLIYNWQFTLSLRFWL 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,324,402
Number of Sequences: 5004
Number of extensions: 23984
Number of successful extensions: 78
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)