Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D16
         (337 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   117   2e-27
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    30   0.40 
11_01_0645 + 5185341-5185568,5185773-5185823                           28   2.2  
06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139...    28   2.2  
01_07_0311 + 42667114-42667132,42667336-42667367,42667449-426678...    27   2.9  
07_03_1513 - 27327702-27328604,27329957-27329995,27330413-273306...    27   3.8  
04_04_0825 + 28443961-28444099,28444527-28444603,28444710-284447...    27   3.8  
10_08_0181 - 15507578-15507610,15507722-15507872,15508430-15510339     26   8.7  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  117 bits (282), Expect = 2e-27
 Identities = 50/91 (54%), Positives = 68/91 (74%)
 Frame = +2

Query: 65  KRSAK*SVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKMFGGR 244
           KRS K  +P+ +D+VKTARFKEL PYDPDW+Y R A+I R IY+R  +GV    K++GGR
Sbjct: 26  KRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGR 85

Query: 245 KRNGVTPSHFCRSSGSIARKALQALEALKLV 337
           +RNG  P HFC+SSG+I+R  LQ L+ + ++
Sbjct: 86  QRNGSRPPHFCKSSGAISRNILQQLQKMGII 116



 Score = 31.9 bits (69), Expect = 0.13
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 10  TVKDVEQDKIVKTVAAHLKKIGKVKCSRSYGLGKDSSFQ 126
           TVKDV   + VK  +AHLK+ GK++      + K + F+
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFK 46


>04_03_0582 +
           17528335-17529790,17529913-17531651,17531814-17532035,
           17532062-17533525
          Length = 1626

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 64  KKIGKVKCSRSYGLGKDSSFQGTGS 138
           +K+ KVK  +SYG+ +  SF+G GS
Sbjct: 292 RKVSKVKAFQSYGVQRKLSFRGAGS 316


>11_01_0645 + 5185341-5185568,5185773-5185823
          Length = 92

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 188 IYIRSPVGVKTVTKMFGGRKRNGVTPSHFCRSSGSIARK 304
           ++ +SP  +  +   + GR+R G  P    R +G IA +
Sbjct: 18  VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56


>06_03_1501 +
           30612643-30613310,30613396-30613501,30613732-30613934,
           30614211-30614502
          Length = 422

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 319 KSLESFTSNTAR*SAEVRGCDTIAFATTKHF 227
           KS+ESF  +  R   EVR CD ++     H+
Sbjct: 358 KSVESFVESQRRAGHEVRACDFVSSPHVDHY 388


>01_07_0311 +
           42667114-42667132,42667336-42667367,42667449-42667822,
           42667895-42668028,42668147-42668303,42668994-42669098,
           42669342-42669645,42670404-42670478,42671467-42672589,
           42673686-42673727,42674017-42674111,42674199-42674239,
           42674375-42674414
          Length = 846

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 60  LEKDRQSEVFQIIWTW 107
           LE DR+ EVF ++W W
Sbjct: 643 LENDRRMEVFFLLWVW 658


>07_03_1513 - 27327702-27328604,27329957-27329995,27330413-27330692,
            27330772-27330942,27331025-27331857,27331939-27332400,
            27332479-27333212,27333301-27333430
          Length = 1183

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 60   LEKDRQSEVFQIIWTW 107
            LE DR+ EVF ++W W
Sbjct: 1104 LEDDRRMEVFFLLWVW 1119


>04_04_0825 +
           28443961-28444099,28444527-28444603,28444710-28444758,
           28445283-28445367,28445506-28445755,28447053-28447373
          Length = 306

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 10  TVKDVEQDKIVKTVAAHLKKIGKVKCSRSYGLGKDSSFQGTGS 138
           +V++ +  KI+K    HL  + K++CS+    G  SS  GT +
Sbjct: 192 SVQESDPFKIIKPEVHHLGPVLKLQCSKVENSGFISSSTGTAA 234


>10_08_0181 - 15507578-15507610,15507722-15507872,15508430-15510339
          Length = 697

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 215 KTVTKMFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLV 337
           +T   MF   +RNG   +HF  SS   A   + ALE  K V
Sbjct: 248 ETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWV 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,462,302
Number of Sequences: 37544
Number of extensions: 152560
Number of successful extensions: 401
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)