Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D16
(337 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein pro... 119 2e-27
BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19 p... 119 2e-27
BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19 p... 119 2e-27
BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19 p... 119 2e-27
BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19 p... 119 2e-27
AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19 p... 119 2e-27
AB209470-1|BAD92707.1| 249|Homo sapiens proteasome beta 2 subun... 31 0.88
CR456387-1|CAG30273.1| 1171|Homo sapiens bA494O16.1 protein. 31 1.2
BC117670-1|AAI17671.1| 1171|Homo sapiens zinc finger, BED-type c... 31 1.2
AL117328-2|CAB62924.1| 1171|Homo sapiens protein ( Human DNA seq... 31 1.2
AB014537-1|BAA31612.2| 1175|Homo sapiens KIAA0637 protein protein. 31 1.2
BC095403-1|AAH95403.1| 562|Homo sapiens plasminogen activator, ... 28 8.2
>M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein
protein.
Length = 145
Score = 119 bits (287), Expect = 2e-27
Identities = 53/91 (58%), Positives = 69/91 (75%)
Frame = +2
Query: 65 KRSAK*SVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKMFGGR 244
K+S K VP+ +D VK A+ KELAPYD +WFY R A+ RH+Y+R GV ++TK++GGR
Sbjct: 23 KKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGR 82
Query: 245 KRNGVTPSHFCRSSGSIARKALQALEALKLV 337
+RNGV PSHF R S S+AR+ LQALE LK+V
Sbjct: 83 QRNGVMPSHFSRGSKSVARRVLQALEGLKMV 113
Score = 35.1 bits (77), Expect = 0.054
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +1
Query: 7 VTVKDVEQDKIVKTVAAHLKKIGKVK 84
VTVKDV Q + V+ +AA LKK GK+K
Sbjct: 4 VTVKDVNQQEFVRALAAFLKKSGKLK 29
>BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 119 bits (287), Expect = 2e-27
Identities = 53/91 (58%), Positives = 69/91 (75%)
Frame = +2
Query: 65 KRSAK*SVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKMFGGR 244
K+S K VP+ +D VK A+ KELAPYD +WFY R A+ RH+Y+R GV ++TK++GGR
Sbjct: 23 KKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGR 82
Query: 245 KRNGVTPSHFCRSSGSIARKALQALEALKLV 337
+RNGV PSHF R S S+AR+ LQALE LK+V
Sbjct: 83 QRNGVMPSHFSRGSKSVARRVLQALEGLKMV 113
Score = 35.1 bits (77), Expect = 0.054
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +1
Query: 7 VTVKDVEQDKIVKTVAAHLKKIGKVK 84
VTVKDV Q + V+ +AA LKK GK+K
Sbjct: 4 VTVKDVNQQEFVRALAAFLKKSGKLK 29
>BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19
protein.
Length = 157
Score = 119 bits (287), Expect = 2e-27
Identities = 53/91 (58%), Positives = 69/91 (75%)
Frame = +2
Query: 65 KRSAK*SVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKMFGGR 244
K+S K VP+ +D VK A+ KELAPYD +WFY R A+ RH+Y+R GV ++TK++GGR
Sbjct: 35 KKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGR 94
Query: 245 KRNGVTPSHFCRSSGSIARKALQALEALKLV 337
+RNGV PSHF R S S+AR+ LQALE LK+V
Sbjct: 95 QRNGVMPSHFSRGSKSVARRVLQALEGLKMV 125
Score = 35.1 bits (77), Expect = 0.054
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +1
Query: 7 VTVKDVEQDKIVKTVAAHLKKIGKVK 84
VTVKDV Q + V+ +AA LKK GK+K
Sbjct: 16 VTVKDVNQQEFVRALAAFLKKSGKLK 41
>BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 119 bits (287), Expect = 2e-27
Identities = 53/91 (58%), Positives = 69/91 (75%)
Frame = +2
Query: 65 KRSAK*SVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKMFGGR 244
K+S K VP+ +D VK A+ KELAPYD +WFY R A+ RH+Y+R GV ++TK++GGR
Sbjct: 23 KKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGR 82
Query: 245 KRNGVTPSHFCRSSGSIARKALQALEALKLV 337
+RNGV PSHF R S S+AR+ LQALE LK+V
Sbjct: 83 QRNGVMPSHFSRGSKSVARRVLQALEGLKMV 113
Score = 35.1 bits (77), Expect = 0.054
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +1
Query: 7 VTVKDVEQDKIVKTVAAHLKKIGKVK 84
VTVKDV Q + V+ +AA LKK GK+K
Sbjct: 4 VTVKDVNQQEFVRALAAFLKKSGKLK 29
>BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 119 bits (287), Expect = 2e-27
Identities = 53/91 (58%), Positives = 69/91 (75%)
Frame = +2
Query: 65 KRSAK*SVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKMFGGR 244
K+S K VP+ +D VK A+ KELAPYD +WFY R A+ RH+Y+R GV ++TK++GGR
Sbjct: 23 KKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGR 82
Query: 245 KRNGVTPSHFCRSSGSIARKALQALEALKLV 337
+RNGV PSHF R S S+AR+ LQALE LK+V
Sbjct: 83 QRNGVMPSHFSRGSKSVARRVLQALEGLKMV 113
Score = 35.1 bits (77), Expect = 0.054
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +1
Query: 7 VTVKDVEQDKIVKTVAAHLKKIGKVK 84
VTVKDV Q + V+ +AA LKK GK+K
Sbjct: 4 VTVKDVNQQEFVRALAAFLKKSGKLK 29
>AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 119 bits (287), Expect = 2e-27
Identities = 53/91 (58%), Positives = 69/91 (75%)
Frame = +2
Query: 65 KRSAK*SVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKMFGGR 244
K+S K VP+ +D VK A+ KELAPYD +WFY R A+ RH+Y+R GV ++TK++GGR
Sbjct: 23 KKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGR 82
Query: 245 KRNGVTPSHFCRSSGSIARKALQALEALKLV 337
+RNGV PSHF R S S+AR+ LQALE LK+V
Sbjct: 83 QRNGVMPSHFSRGSKSVARRVLQALEGLKMV 113
Score = 35.1 bits (77), Expect = 0.054
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +1
Query: 7 VTVKDVEQDKIVKTVAAHLKKIGKVK 84
VTVKDV Q + V+ +AA LKK GK+K
Sbjct: 4 VTVKDVNQQEFVRALAAFLKKSGKLK 29
>AB209470-1|BAD92707.1| 249|Homo sapiens proteasome beta 2 subunit
variant protein.
Length = 249
Score = 31.1 bits (67), Expect = 0.88
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +2
Query: 140 YDPDWFYVRCAAILRHIYIRSPVGVKTVTKMFGGRKRNGVTPSHFCRSSGSIARKAL 310
Y P R +LR P G + T + GGR+ G S CR G R+AL
Sbjct: 179 YTPTISRERAVELLRKCLEEGPGGAGSSTALGGGRRSVGQDRSSSCRRKGRGRRRAL 235
>CR456387-1|CAG30273.1| 1171|Homo sapiens bA494O16.1 protein.
Length = 1171
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 312 WRALRAILPDDLQK*EGVTPLRLRPPNILVTVLTPTGE 199
WRA RAI+ + G+ PL PP +L ++L P GE
Sbjct: 332 WRAHRAIVLQE-NGGTGIPPLYSTPPTLLPSLLPPEGE 368
>BC117670-1|AAI17671.1| 1171|Homo sapiens zinc finger, BED-type
containing 4 protein.
Length = 1171
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 312 WRALRAILPDDLQK*EGVTPLRLRPPNILVTVLTPTGE 199
WRA RAI+ + G+ PL PP +L ++L P GE
Sbjct: 332 WRAHRAIVLQE-NGGTGIPPLYSTPPTLLPSLLPPEGE 368
>AL117328-2|CAB62924.1| 1171|Homo sapiens protein ( Human DNA
sequence from clone RP11-494O16 on chromosome 22
Contains the ZBED4 gene for zinc finger, BED-type
containing 4, the gene for ).
Length = 1171
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 312 WRALRAILPDDLQK*EGVTPLRLRPPNILVTVLTPTGE 199
WRA RAI+ + G+ PL PP +L ++L P GE
Sbjct: 332 WRAHRAIVLQE-NGGTGIPPLYSTPPTLLPSLLPPEGE 368
>AB014537-1|BAA31612.2| 1175|Homo sapiens KIAA0637 protein protein.
Length = 1175
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 312 WRALRAILPDDLQK*EGVTPLRLRPPNILVTVLTPTGE 199
WRA RAI+ + G+ PL PP +L ++L P GE
Sbjct: 336 WRAHRAIVLQE-NGGTGIPPLYSTPPTLLPSLLPPEGE 372
>BC095403-1|AAH95403.1| 562|Homo sapiens plasminogen activator,
tissue protein.
Length = 562
Score = 27.9 bits (59), Expect = 8.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 253 WCHTLSLLQIIWQYC 297
WCH L ++ W+YC
Sbjct: 277 WCHVLKSRRLTWEYC 291
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,209,424
Number of Sequences: 237096
Number of extensions: 885450
Number of successful extensions: 6026
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6026
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1794632842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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