Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D16
         (337 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   102   6e-23
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   102   6e-23
AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic in...    27   3.3  
Z81586-4|CAB04688.2|  366|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U23180-2|AAC46726.3|  249|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical p...    26   5.8  
U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    26   5.8  
AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical...    26   5.8  
Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical p...    26   7.7  
Z22176-12|CAO82057.1|  546|Caenorhabditis elegans Hypothetical p...    26   7.7  
Z22176-10|CAD45611.1| 1157|Caenorhabditis elegans Hypothetical p...    26   7.7  
Z22176-9|CAA80140.1| 1139|Caenorhabditis elegans Hypothetical pr...    26   7.7  
AF424978-1|AAL23934.1| 1157|Caenorhabditis elegans UNC-16 protein.     26   7.7  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  102 bits (245), Expect = 6e-23
 Identities = 48/91 (52%), Positives = 61/91 (67%)
 Frame = +2

Query: 65  KRSAK*SVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKMFGGR 244
           K+S K  VP+  DLVK    KELAP DPDWFY R A++ RH+Y R P G+    K++GG 
Sbjct: 24  KKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFR-PAGIGAFKKVYGGN 82

Query: 245 KRNGVTPSHFCRSSGSIARKALQALEALKLV 337
           KR GV P+HF  S+G+  RKA+Q LE +K V
Sbjct: 83  KRRGVAPNHFQTSAGNCLRKAVQQLEKIKWV 113



 Score = 33.5 bits (73), Expect = 0.039
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +1

Query: 1  RSVTVKDVEQDKIVKTVAAHLKKIGKVK 84
          R+ ++KDV+Q +  K++A  LKK GKVK
Sbjct: 3  RATSIKDVDQHEATKSIAHFLKKSGKVK 30


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  102 bits (245), Expect = 6e-23
 Identities = 48/91 (52%), Positives = 61/91 (67%)
 Frame = +2

Query: 65  KRSAK*SVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKMFGGR 244
           K+S K  VP+  DLVK    KELAP DPDWFY R A++ RH+Y R P G+    K++GG 
Sbjct: 24  KKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFR-PAGIGAFKKVYGGN 82

Query: 245 KRNGVTPSHFCRSSGSIARKALQALEALKLV 337
           KR GV P+HF  S+G+  RKA+Q LE +K V
Sbjct: 83  KRRGVAPNHFQTSAGNCLRKAVQQLEKIKWV 113



 Score = 33.5 bits (73), Expect = 0.039
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +1

Query: 1  RSVTVKDVEQDKIVKTVAAHLKKIGKVK 84
          R+ ++KDV+Q +  K++A  LKK GKVK
Sbjct: 3  RATSIKDVDQHEATKSIAHFLKKSGKVK 30


>AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.E protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +2

Query: 101 DLVKTARFKELAPYDPDWFYVRCAAILRH----IYIRSPVGVKTVTKMF 235
           DL+K   + +  P+D +W  V   A L H    +Y   P G   + +MF
Sbjct: 188 DLLKLRAYIDANPFDTEWELVTQRAWLMHWALFVYYNYPKGRDEIIEMF 236


>Z81586-4|CAB04688.2|  366|Caenorhabditis elegans Hypothetical
           protein T05F1.5 protein.
          Length = 366

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 173 QHSVHKTNQGHREPVP*NELSLPSP 99
           QH+    NQGHR P P +   L SP
Sbjct: 82  QHNRVGNNQGHRSPSPTSSPQLSSP 106


>U23180-2|AAC46726.3|  249|Caenorhabditis elegans Hypothetical
           protein C28F5.2 protein.
          Length = 249

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -2

Query: 324 ASRAWRALRAILPDDLQ 274
           ASRAWR L AIL D+L+
Sbjct: 185 ASRAWRTLIAILIDELR 201


>Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 141 MTLIGFMYAVLLYC 182
           M ++GF YAV++YC
Sbjct: 212 MIILGFQYAVIIYC 225


>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 238 WSQTQWCHTLSLLQIIW 288
           W+Q  W + ++L+Q+IW
Sbjct: 98  WNQLLWIYPMALVQLIW 114


>AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 141 MTLIGFMYAVLLYC 182
           M ++GF YAV++YC
Sbjct: 212 MIILGFQYAVIIYC 225


>Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical
            protein ZK1098.10d protein.
          Length = 1185

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 7    VTVKDVEQDKIVKTVAAHLKKIGKVKCSRSYGLG 108
            V V D E  +IVK  AAH +K  +V+  +  G G
Sbjct: 944  VVVLDAESLQIVKVFAAHPRKDSQVRNMQWVGAG 977


>Z22176-12|CAO82057.1|  546|Caenorhabditis elegans Hypothetical
           protein ZK1098.10c protein.
          Length = 546

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 7   VTVKDVEQDKIVKTVAAHLKKIGKVKCSRSYGLG 108
           V V D E  +IVK  AAH +K  +V+  +  G G
Sbjct: 305 VVVLDAESLQIVKVFAAHPRKDSQVRNMQWVGAG 338


>Z22176-10|CAD45611.1| 1157|Caenorhabditis elegans Hypothetical
            protein ZK1098.10b protein.
          Length = 1157

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 7    VTVKDVEQDKIVKTVAAHLKKIGKVKCSRSYGLG 108
            V V D E  +IVK  AAH +K  +V+  +  G G
Sbjct: 916  VVVLDAESLQIVKVFAAHPRKDSQVRNMQWVGAG 949


>Z22176-9|CAA80140.1| 1139|Caenorhabditis elegans Hypothetical
           protein ZK1098.10a protein.
          Length = 1139

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 7   VTVKDVEQDKIVKTVAAHLKKIGKVKCSRSYGLG 108
           V V D E  +IVK  AAH +K  +V+  +  G G
Sbjct: 898 VVVLDAESLQIVKVFAAHPRKDSQVRNMQWVGAG 931


>AF424978-1|AAL23934.1| 1157|Caenorhabditis elegans UNC-16 protein.
          Length = 1157

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 7    VTVKDVEQDKIVKTVAAHLKKIGKVKCSRSYGLG 108
            V V D E  +IVK  AAH +K  +V+  +  G G
Sbjct: 916  VVVLDAESLQIVKVFAAHPRKDSQVRNMQWVGAG 949


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,341,234
Number of Sequences: 27780
Number of extensions: 135559
Number of successful extensions: 329
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)