Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D15
         (258 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    67   3e-13
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   0.72 
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    23   5.1  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    23   5.1  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    23   6.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    23   6.7  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    23   8.9  

>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 67.3 bits (157), Expect = 3e-13
 Identities = 28/41 (68%), Positives = 36/41 (87%)
 Frame = +3

Query: 96  SCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGM 218
           SCR Y+ ++PEV+++V+VNVR I EMGAYV LLEY+NIEGM
Sbjct: 5   SCRMYENRFPEVDELVVVNVRQIQEMGAYVKLLEYDNIEGM 45


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 0.72
 Identities = 9/41 (21%), Positives = 25/41 (60%)
 Frame = -2

Query: 200 VLQQVDVRAHLSYRPHVYHHYIFYFWILFLIKPTRKWHLVF 78
           +L   +V+ H  +  HV+  ++F+ + +F+I    +++++F
Sbjct: 127 ILSFSNVKNHNRFYAHVFLSWLFFGFTIFIIYRELRYYVIF 167


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 8   GTTELFHHNWINFAIIL 58
           GTT   +HNW N + IL
Sbjct: 323 GTTLSINHNWCNASCIL 339


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 7/19 (36%), Positives = 15/19 (78%), Gaps = 2/19 (10%)
 Frame = -2

Query: 161  RPHVYHHYI--FYFWILFL 111
            +P++ H+ +  ++FW+LFL
Sbjct: 1091 KPYLIHNVVGLYFFWLLFL 1109


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 181 TSTCWSTTILRA*FYCLSYQEDVSGL 258
           T   WST  LR  F C+  Q  + GL
Sbjct: 685 TGELWSTIFLRMIFGCVIMQLTMMGL 710


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 91  GILCLYSFKFYKNNS 47
           GIL +Y F+ ++NNS
Sbjct: 411 GILDIYGFEIFENNS 425


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
          Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 97 ESGILCLYSFKFYK 56
          ESG++CLY +  Y+
Sbjct: 58 ESGLVCLYLYLIYR 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 935,742
Number of Sequences: 5004
Number of extensions: 13604
Number of successful extensions: 46
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)