Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D15
(258 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0677 + 10343089-10343604,10344316-10344462,10344539-103446... 65 6e-12
07_03_1773 - 29422660-29422806,29423103-29423201,29423811-294239... 65 8e-12
01_06_0960 - 33376012-33376433,33376566-33376731,33376848-333770... 27 2.7
04_04_0674 + 27173948-27174188,27174704-27175260,27175310-271753... 26 4.8
04_03_0309 - 14186880-14187151,14187428-14188652 25 6.3
03_05_0990 - 29503950-29504462,29504567-29504686,29514956-295150... 25 6.3
01_01_0615 - 4576554-4576560,4577808-4577824,4578776-4578911,457... 25 6.3
11_04_0072 - 13192600-13192605,13192750-13192795,13192934-131930... 25 8.4
05_05_0366 + 24442227-24442472,24442549-24442734,24442818-244429... 25 8.4
>03_02_0677 +
10343089-10343604,10344316-10344462,10344539-10344643,
10345411-10345509,10345662-10345814
Length = 339
Score = 65.3 bits (152), Expect = 6e-12
Identities = 29/45 (64%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Frame = +3
Query: 87 MP-LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGM 218
MP L CR Y+ ++PEV+ VM+ V+ IA+MGAYV LLEYNNIEGM
Sbjct: 1 MPNLECRMYEPRFPEVDAAVMIQVKHIADMGAYVSLLEYNNIEGM 45
>07_03_1773 -
29422660-29422806,29423103-29423201,29423811-29423915,
29423990-29424136,29424436-29424954
Length = 338
Score = 64.9 bits (151), Expect = 8e-12
Identities = 29/45 (64%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Frame = +3
Query: 87 MP-LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGM 218
MP L CR Y+ +PEVE VM+ V+ +AE+GAYV LLEYNNIEGM
Sbjct: 1 MPNLECRMYEAPFPEVETAVMIQVKHLAELGAYVSLLEYNNIEGM 45
>01_06_0960 -
33376012-33376433,33376566-33376731,33376848-33377033,
33377206-33377442
Length = 336
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 93 LSCRFYQEKYPEVEDVVMVNVRSIAE 170
L+ FY E P+ ED+V+ +R I +
Sbjct: 34 LAIGFYHETCPQAEDLVLAEMREIVQ 59
>04_04_0674 +
27173948-27174188,27174704-27175260,27175310-27175399,
27175475-27175714,27175801-27176022,27176124-27176433,
27176528-27176847,27176906-27177021,27177133-27177227,
27177331-27177407,27177520-27177615
Length = 787
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 108 YQEKYPEVEDVVMVNVRSI 164
+ + YPEV+D +M VR++
Sbjct: 362 FADSYPEVDDEIMAQVRTV 380
>04_03_0309 - 14186880-14187151,14187428-14188652
Length = 498
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +3
Query: 99 CRFYQEKYPEVEDVVMVNVRSI----AEMGAYVHLL 194
C FY+++ E+ D+V+V R E+ AY LL
Sbjct: 194 CAFYEDEVEELRDIVLVRERESRALQKEVDAYRRLL 229
>03_05_0990 -
29503950-29504462,29504567-29504686,29514956-29515012,
29515635-29515689,29515765-29515845,29515928-29515983,
29516112-29516256,29516347-29516415,29517355-29517467,
29517619-29517708,29518112-29518176,29519256-29519667
Length = 591
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 182 VRAHLSYRPHVYHHY 138
+RAHL PH +HH+
Sbjct: 9 LRAHLHPHPHAHHHH 23
>01_01_0615 -
4576554-4576560,4577808-4577824,4578776-4578911,
4579488-4579543,4580540-4580635,4580864-4580927,
4581022-4581077,4581170-4581249,4581778-4581842,
4581970-4582177,4582889-4583447
Length = 447
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 96 SCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEY 200
+CRF VE + +N +E VHLL Y
Sbjct: 288 NCRFLNGPGTSVEVLEQINQHICSEQACTVHLLNY 322
>11_04_0072 -
13192600-13192605,13192750-13192795,13192934-13193047,
13193694-13193815,13193914-13193985,13194808-13194957,
13195386-13195388
Length = 170
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = -2
Query: 203 VVLQQVDVRAHLSYRPHV----YHHYIFYFWI 120
++ ++VD+ + RP + Y HY+ YFW+
Sbjct: 31 ILNEEVDLLQNPPPRPPIECIEYPHYLLYFWV 62
>05_05_0366 +
24442227-24442472,24442549-24442734,24442818-24442983,
24443109-24443560
Length = 349
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 93 LSCRFYQEKYPEVEDVVMVNVRSIAE 170
L FY K P EDVV+ +R I E
Sbjct: 37 LQVGFYHAKCPVAEDVVLGEMRMILE 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,603,724
Number of Sequences: 37544
Number of extensions: 76522
Number of successful extensions: 206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -