Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D15
         (258 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-10|AAK27873.2|  342|Caenorhabditis elegans Hypothetical...    61   1e-10
AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine r...    31   0.15 
AF247970-1|AAF66431.1|  323|Caenorhabditis elegans cell cycle ch...    27   2.4  
Z48230-1|CAA88262.2|  587|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z47357-3|CAA87422.1|  360|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AC024814-1|AAF59560.3|  295|Caenorhabditis elegans Hypothetical ...    25   5.6  
Z81131-3|CAB03424.1|  438|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>AC087079-10|AAK27873.2|  342|Caenorhabditis elegans Hypothetical
           protein Y37E3.10 protein.
          Length = 342

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 24/42 (57%), Positives = 34/42 (80%)
 Frame = +3

Query: 93  LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGM 218
           + CRFY+ ++P+VE+ V+ NV+ IA+MGAYV L EYN+ EGM
Sbjct: 1   MKCRFYENQFPDVEETVVANVKMIADMGAYVRLSEYNDKEGM 42


>AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine
           receptor, class v protein13 protein.
          Length = 350

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 215 ALNIVVLQQVDVRAHLSYR--PHVYHHYIFYFWILFLIKPTRKWHLVFIFF 69
           +L   VL QV +R HLS      +    I  FW +F++  ++K  LV IFF
Sbjct: 293 SLRKYVLYQVGLRKHLSVNNTAMITVQSIVSFWFIFILLYSKKSLLVVIFF 343


>AF247970-1|AAF66431.1|  323|Caenorhabditis elegans cell cycle
           checkpoint protein Rad9 protein.
          Length = 323

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 93  LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYN 203
           +SCR + EK  E  D+       + EMG+ +H   YN
Sbjct: 121 ISCRIF-EKLAEFSDIERTIHAKLREMGSMLHKPTYN 156


>Z48230-1|CAA88262.2|  587|Caenorhabditis elegans Hypothetical
           protein F42G10.1 protein.
          Length = 587

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/31 (32%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = +3

Query: 84  KMPLSCR--FYQEKYPEVEDVVMVNVRSIAE 170
           K+P+S R  FY   + E+ D+ ++N+R++++
Sbjct: 154 KIPISTRNHFYHGLFDEIRDIHILNIRTMSK 184


>Z47357-3|CAA87422.1|  360|Caenorhabditis elegans Hypothetical
           protein ZK1128.3 protein.
          Length = 360

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 176 AHLSYRPHVYHHYIFYFWILFLIKP 102
           AH++  P  YH  + + W L  + P
Sbjct: 331 AHINMEPEKYHRILHWLWDLSPVNP 355


>AC024814-1|AAF59560.3|  295|Caenorhabditis elegans Hypothetical
           protein Y54F10AR.2 protein.
          Length = 295

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 168 EMGAYVHLLEYNNIEGM 218
           EMG Y+H +E+ N++ +
Sbjct: 186 EMGPYIHSIEFTNVDAV 202


>Z81131-3|CAB03424.1|  438|Caenorhabditis elegans Hypothetical
           protein T24D1.4 protein.
          Length = 438

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 143 HYIFYFWILFLIKPTRKWHLVFIF 72
           H+ FY W  FL  PT +  L  ++
Sbjct: 320 HFTFYIWRRFLANPTMRTTLAPLY 343


>Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical
           protein R07B5.3 protein.
          Length = 326

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 173 HLSYRPHVYHHYIFYFWILFLIKPTRKWHLVFIFF 69
           ++S  P   H +IF  +I   I     W+LVFIFF
Sbjct: 53  YVSTSPQEIHPFIFRSFIWMQI-----WNLVFIFF 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,096,521
Number of Sequences: 27780
Number of extensions: 74941
Number of successful extensions: 258
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)