Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D15
         (258 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    19   9.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    19   9.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   9.8  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    19   9.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    19   9.8  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 211 SILLYSSKWTYAPI 170
           +I L+S  WT AP+
Sbjct: 174 AIWLFSLGWTIAPM 187


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +3

Query: 78  KHKMPLSCRFYQEKYPEVEDVVMVNVRSIA 167
           K  + LSC    E YP    +  + + S++
Sbjct: 125 KLTLVLSCAMKFESYPHDTQICSMMIESLS 154


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 140 SDGKREVYS*DGRVRPLAGVQQY 208
           +DGK +V    G +R +A   QY
Sbjct: 728 NDGKFQVLQLVGMLRGIASGMQY 750


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 82  CLYSFKFYKNNS 47
           C YS  +Y NN+
Sbjct: 311 CNYSNNYYNNNN 322


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 211 SILLYSSKWTYAPI 170
           +I L+S  WT AP+
Sbjct: 50  AIWLFSLGWTIAPM 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,574
Number of Sequences: 438
Number of extensions: 935
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4636803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)