Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D14
         (229 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    87   4e-19
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...    82   8e-18
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    29   0.11 
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    27   0.33 
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    25   1.8  
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    24   3.1  
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    23   4.1  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    23   4.1  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    23   5.4  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    23   7.2  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    23   7.2  
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    22   9.5  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 86.6 bits (205), Expect = 4e-19
 Identities = 42/62 (67%), Positives = 50/62 (80%)
 Frame = +1

Query: 43  TAIIMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKA*LVIIARNAPPLR 222
           TA +   +KK KK+ ++INS+LAL MKSGKY LGYK TLKTLR GKA L++IA NAPPLR
Sbjct: 7   TAPVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLR 66

Query: 223 KS 228
           KS
Sbjct: 67  KS 68


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 82.2 bits (194), Expect = 8e-18
 Identities = 39/57 (68%), Positives = 46/57 (80%)
 Frame = +1

Query: 58  VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKA*LVIIARNAPPLRKS 228
           V  KK KK+ ++IN++LAL MKSGKY LGYK TLKTLR GKA L++IA N PPLRKS
Sbjct: 4   VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKS 60


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 28.7 bits (61), Expect = 0.11
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 70  KQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQG 177
           ++KK I+     ++L   SGKYC G   T+  L++G
Sbjct: 279 QEKKLIQRFFDEISL--DSGKYCFGVVDTMNALQEG 312


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = -2

Query: 207 IPGDDHQLSFPLSECLQSLFVA 142
           IP DD  L FPL ECL S+ VA
Sbjct: 597 IPDDDPNL-FPLFECLSSVAVA 617


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 142 GYKQTLKTLRQGKA*LVIIARNAPPL 219
           G K+ +K +R+G+  LVI+A +  P+
Sbjct: 57  GVKEVVKAVRKGEKGLVILAGDISPM 82


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
          subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 12 FGTMVRITVENCYHNGCSKETEK 80
          FGT+ R+  + C+     KE+ K
Sbjct: 2  FGTLPRVQPKRCFQTAIGKESPK 24


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 76  KKTIESINSRLALVMKSGKYCLGY 147
           ++T+E       +V K G++C+GY
Sbjct: 353 RRTVERQAVETHIVAKPGEFCVGY 376


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/44 (20%), Positives = 22/44 (50%)
 Frame = -2

Query: 147 VAQAVFARLHNQSQTGINRLDGLFLFLCCNHYDSSFLQ*SSPSC 16
           +AQ +F +L+N     I+ +  L+  +   +    +++ + P C
Sbjct: 323 IAQHIFTKLYNNDYMAIDTMTQLYCEVHQGYLADRYVEGTCPKC 366


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = -2

Query: 195 DHQLSFPLSECLQSLFVAQAVFARLHNQSQTGIN 94
           DH L  P  +  ++ ++ Q  F ++  +   G N
Sbjct: 199 DHSLFAPYDDAFENFYIYQEWFEQVLQKKNAGFN 232


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 120 HNQSQTGINRLDGLFLFLCCNH 55
           H  S  GI  LDGL     CN+
Sbjct: 701 HLWSLDGIQHLDGLLKLSACNN 722


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
            polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 117  YEVWQILLGLQTNFEDTQTRESLVGDHRQECA 212
            Y+  QI   LQT F + + R + V  H+Q  A
Sbjct: 963  YKSRQIRTNLQTVFIEERDRTATVQPHKQATA 994


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 30 ITVENCYHNGCSKETE 77
          + VENCY+N  S + E
Sbjct: 29 VDVENCYYNSKSLKEE 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 997,659
Number of Sequences: 5004
Number of extensions: 17131
Number of successful extensions: 40
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)