Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D14
(229 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 83 4e-17
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 76 4e-15
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 73 3e-14
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 28 0.93
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 27 1.6
12_01_0068 - 580870-581287,581440-582002 27 2.8
07_01_0325 + 2275922-2276013,2276467-2276500,2276810-2276932,227... 27 2.8
03_05_0830 + 28034179-28035492 27 2.8
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 26 4.9
12_01_0968 + 9750130-9750190,9750391-9750596 25 6.5
08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,302... 25 6.5
11_01_0449 - 3473662-3475049,3476026-3476128,3476215-3476439,347... 25 8.6
01_03_0058 + 12104234-12104376,12104468-12104582,12104726-121048... 25 8.6
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 82.6 bits (195), Expect = 4e-17
Identities = 40/58 (68%), Positives = 47/58 (81%)
Frame = +1
Query: 55 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKA*LVIIARNAPPLRKS 228
MVAAKK KK+ ++IN++L LVMKSGKY LGYK L+TLR KA LVII+ N PPLRKS
Sbjct: 1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKS 58
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 76.2 bits (179), Expect = 4e-15
Identities = 36/57 (63%), Positives = 43/57 (75%)
Frame = +1
Query: 58 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKA*LVIIARNAPPLRKS 228
V A QKK+ ++IN++L LVMKSGKY LGYK LKTLR K L+I+A N PPLRKS
Sbjct: 43 VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLRKS 99
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 72.9 bits (171), Expect = 3e-14
Identities = 35/51 (68%), Positives = 38/51 (74%)
Frame = +1
Query: 76 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKA*LVIIARNAPPLRKS 228
KK E IN++L LVMKSGKY LGYK LKTLR K LVI+A N PPLRKS
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKS 176
>08_02_1073 - 24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 28.3 bits (60), Expect = 0.93
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 108 GSGYEVWQILLGLQTNFEDTQTRESLVGDHRQECASSE 221
G YE+ I LG + DT+T + GD E SSE
Sbjct: 993 GKIYEMMTIALGGRWGRSDTETEAATTGDASTETGSSE 1030
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 27.5 bits (58), Expect = 1.6
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +1
Query: 40 KTAIIMVAAKKQKKTIESINSRLALVMKSGKY-CL--GYKQTLKTLRQGKA*LVIIARNA 210
KT + + K + L LV ++ + CL G K+ +K++R+G+ L IIA N
Sbjct: 11 KTPVALAPIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNI 70
Query: 211 PPL 219
P+
Sbjct: 71 SPI 73
>12_01_0068 - 580870-581287,581440-582002
Length = 326
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 123 VWQILLGLQTNFEDTQTRESLVGDHRQECASS 218
V IL+ LQ+N L DHRQ +SS
Sbjct: 176 VGPILMALQSNLSSPHAASFLDADHRQAASSS 207
>07_01_0325 +
2275922-2276013,2276467-2276500,2276810-2276932,
2277334-2277401,2277494-2277585,2278662-2278987,
2280771-2281142
Length = 368
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 43 TAIIMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGK 180
+A+++V K K ++S L L++ GYK+ ++QG+
Sbjct: 40 SALVLVLTKSDKPALDSCLDNLGLLLTKFLDLQGYKRLESLVKQGE 85
>03_05_0830 + 28034179-28035492
Length = 437
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 124 SGKYCLGYKQTLKTLRQGKA*LVIIARN 207
+GKY G TLKTL G +I+ N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326
>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 58 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQG 177
V++ Q +ES+ + L V SG Y LG+KQ L+T +G
Sbjct: 1333 VSSSLQFSGLESMET-LKEVWLSGSYELGFKQQLETELKG 1371
>12_01_0968 + 9750130-9750190,9750391-9750596
Length = 88
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 192 HQLSFPLSECLQSLFVAQAVFARLHNQSQTGINRLDGLFLFLCCNHY 52
+ L+ +S+ L+ A A FA + Q + L FLF NHY
Sbjct: 39 YNLTEHISQTLELQQSANAQFANFNKMMQQQHDDLQAYFLFQGFNHY 85
>08_01_0343 -
3025577-3025810,3026428-3026505,3026630-3026748,
3027566-3027645,3028034-3028107,3028536-3028620,
3028704-3028789,3028968-3029038,3029126-3029207,
3029490-3029531,3029552-3029584,3029699-3029794,
3030163-3030414,3030970-3031149,3032079-3032119,
3032341-3032470,3032504-3032606,3032686-3032773,
3033151-3033304,3033688-3033739,3033815-3033894,
3034478-3034789,3034886-3034955,3035033-3035100,
3035405-3035678,3036408-3036580,3037036-3037128,
3037228-3037443
Length = 1121
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 143 PKQYLPDFITRARRELID 90
PKQ LP IT RR L+D
Sbjct: 532 PKQLLPTVITDMRRRLLD 549
>11_01_0449 -
3473662-3475049,3476026-3476128,3476215-3476439,
3476689-3476856,3477414-3477529,3477640-3477792,
3477879-3478022,3478980-3479583
Length = 966
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -2
Query: 141 QAVFARLHNQSQTGINRLDGLFLFLCCNHYDSS 43
Q FAR H G R+ + F+CC ++ ++
Sbjct: 770 QLWFARKHLMVPGGEERIPDIVRFICCGYHPTN 802
>01_03_0058 +
12104234-12104376,12104468-12104582,12104726-12104803,
12104963-12105068,12105205-12105347,12105508-12105609
Length = 228
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 99 FPSGSGYEVWQILLGLQTNFEDTQTRESLVGDHRQECASSE 221
F + Y+VWQI L N DT + +R C +S+
Sbjct: 102 FLLNAAYDVWQIEQSLAPNAADTSGTWRVCKFNRAACNASQ 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,862,712
Number of Sequences: 37544
Number of extensions: 119861
Number of successful extensions: 275
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 268085412
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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