Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D14
         (229 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical ...    80   2e-16
AL032633-2|CAA21595.2|  428|Caenorhabditis elegans Hypothetical ...    29   0.34 
Z81030-11|CAE17704.1|  100|Caenorhabditis elegans Hypothetical p...    27   1.8  
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    26   4.1  
Z37139-5|CAA85490.1|  558|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z69662-3|CAA93502.1|  449|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical p...    25   7.2  
Z66496-1|CAA91282.1|  404|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut...    25   9.6  
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion...    25   9.6  
AF099925-2|AAC69505.1|  265|Caenorhabditis elegans Hypothetical ...    25   9.6  
AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine re...    25   9.6  

>AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical
           protein Y106G6H.3 protein.
          Length = 113

 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 39/58 (67%), Positives = 46/58 (79%)
 Frame = +1

Query: 55  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKA*LVIIARNAPPLRKS 228
           M  A K +K  E+INSRL++VMK+G+Y LGYKQTLK+L  GKA LVIIA N PPLRKS
Sbjct: 1   MAPAAKPQKNAENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLRKS 58


>AL032633-2|CAA21595.2|  428|Caenorhabditis elegans Hypothetical
           protein Y106G6A.2a protein.
          Length = 428

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -3

Query: 170 LSVFKVCL*PKQYLPDFITRARRELIDSMVFFCFFAATIMIAVFYSDPHH 21
           LS   +C+  +++  + + R    L D++++ C F       + Y+DPHH
Sbjct: 324 LSHHDLCI-RERWTKESLNRDWSTLCDAVIYLCIFIGMSHTKLKYTDPHH 372


>Z81030-11|CAE17704.1|  100|Caenorhabditis elegans Hypothetical
           protein C01G10.15 protein.
          Length = 100

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 42  NCYHNGCSKETEKDHRVY*FPSGS-GYEVWQILLG 143
           N Y+NGCS  +  +   Y +PS S GY  + +  G
Sbjct: 64  NGYNNGCSGCSNNNGYTYYYPSNSNGYTTYYLTYG 98


>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 117 YEVWQI-LLGLQTNFEDTQTRESLVGDHRQECA 212
           +E+ Q+ L+G+  NFEDT    +L G     CA
Sbjct: 666 HEIHQLHLMGITGNFEDTYEPSALTGLFMSLCA 698


>Z37139-5|CAA85490.1|  558|Caenorhabditis elegans Hypothetical
           protein C14B1.9 protein.
          Length = 558

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -2

Query: 201 GDDHQLS--FPLSECLQSLFVAQAVFARLHNQSQTGINRLDGLFLFLCCNHYDSSF 40
           G+D+ L   F   E LQ          ++ N ++TGI++L GL L   CN     F
Sbjct: 194 GEDNLLDTIFSQFEALQEQPGILGYVKKVENNNKTGISKLFGLMLPDGCNDKKMQF 249


>Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical
           protein F54D5.14 protein.
          Length = 1130

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 72  FLCCNHYDSSFLQ*SSPSCRIPA 4
           FLC +H D+  L+    S RIPA
Sbjct: 522 FLCSSHLDAEILRNIFQSLRIPA 544


>Z69662-3|CAA93502.1|  449|Caenorhabditis elegans Hypothetical
           protein F56D5.3 protein.
          Length = 449

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 135 LLGLQTNFEDTQTRESLVGDHRQECASSEE 224
           L+G++TN ++ Q + + V D +Q C   E+
Sbjct: 244 LIGIKTNSKEFQDKGTTVEDAKQMCIEYEK 273


>Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical
           protein F54D5.14 protein.
          Length = 1130

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 72  FLCCNHYDSSFLQ*SSPSCRIPA 4
           FLC +H D+  L+    S RIPA
Sbjct: 522 FLCSSHLDAEILRNIFQSLRIPA 544


>Z66496-1|CAA91282.1|  404|Caenorhabditis elegans Hypothetical
           protein E04D5.2 protein.
          Length = 404

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 104 RELIDSMVFFCFFAATIMIAVFYS 33
           R  I +++F CFF+  I I V Y+
Sbjct: 164 RGRIVTVIFVCFFSVAIRIPVLYA 187


>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glutamate
            receptor protein1 protein.
          Length = 1025

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 129  ARLHNQSQTGINRLDGLFLFLCCNHYDSSFLQ*SSP 22
            +R  N  ++ ++R  GLF FL C  +   FL   SP
Sbjct: 955  SRCRNIVESDVHRETGLFAFLSCFLFAILFLWPCSP 990


>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
            ionotropic glutamatereceptor NMR-1 protein.
          Length = 1025

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 129  ARLHNQSQTGINRLDGLFLFLCCNHYDSSFLQ*SSP 22
            +R  N  ++ ++R  GLF FL C  +   FL   SP
Sbjct: 955  SRCRNIVESDVHRETGLFAFLSCFLFAILFLWPCSP 990


>AF099925-2|AAC69505.1|  265|Caenorhabditis elegans Hypothetical
           protein K01A2.5 protein.
          Length = 265

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 118 MKSGKYCLGYKQTLK 162
           MK  +YCLG  +TLK
Sbjct: 83  MKDSEYCLGLMETLK 97


>AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein17 protein.
          Length = 328

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 119 ITRARRELIDSMVFFCFFAATIMIAVFYSD 30
           +T+++  ++    FFCFF A   +   Y D
Sbjct: 246 LTKSQLSILLQTFFFCFFHAVTSLIYVYMD 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,663,175
Number of Sequences: 27780
Number of extensions: 99966
Number of successful extensions: 272
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 55
effective length of database: 11,212,298
effective search space used: 224245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)