Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D14
         (229 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   2.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   3.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   3.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       20   4.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    19   7.8  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
          receptor 2 protein.
          Length = 210

 Score = 20.6 bits (41), Expect = 2.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 70 SLLQPL**QFSTVILTIVPNS 8
          ++++PL  +FS  + T+VPNS
Sbjct: 7  NIMKPLM-EFSATLDTVVPNS 26


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 86  MVFFCFFAATIMIAVFYSDPH 24
           ++ F  F     IAV  S PH
Sbjct: 531 LIIFTLFTIIATIAVLLSAPH 551


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 67  KKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLR 171
           +KQ+  I +   + A   K  K+ + YK+ LK  R
Sbjct: 413 QKQRAEILAKEHKAAADQKLEKHLIEYKKMLKIKR 447


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 19.8 bits (39), Expect = 4.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 84  GLFLFLCCN 58
           GLFLF C N
Sbjct: 300 GLFLFACTN 308


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
          protein.
          Length = 190

 Score = 19.0 bits (37), Expect = 7.8
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +3

Query: 33 TVENCYHNG 59
          +V +C+HNG
Sbjct: 21 SVHHCHHNG 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,658
Number of Sequences: 438
Number of extensions: 1093
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3659655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)