Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D13
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    32   0.044
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    31   0.13 
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.6  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    27   2.2  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      26   2.9  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    26   2.9  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    26   3.8  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    26   3.8  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    26   3.8  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   5.0  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   6.7  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    25   6.7  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   6.7  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.8  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    25   8.8  

>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 32.3 bits (70), Expect = 0.044
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 266 VSIKLFRFIQHNIDQFIPTICKSLV 192
           +SI++F F+  NI   +PT CKSLV
Sbjct: 271 LSIRIFPFVAENIFNVLPTTCKSLV 295


>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 90  VSDLADAAKLKSKNYHLIVDEYEPDTFDAIRHRINQRFTN 209
           +SDL    K +SKN+H++   Y     +A R ++  R+ N
Sbjct: 217 LSDLDSIYKRESKNWHIVSQFYNMLELEAARQKLENRYLN 256


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 66  VVEVYIDGVSDLADAAKLKSKNYHLIVDEYEPDTFDAIRHRINQ 197
           VV+  I   S + DAAK  + N     DE+     + IR+ +N+
Sbjct: 57  VVQSQIAKASPIVDAAKQATVNVKSYYDEHAKPKVENIRYEVNE 100


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 336 VEEDYQFLSELAALKAITEKVNEGVIKPDNVIDFYNLRFRSLHALSDFHGP 488
           VEED     ++   + ITE+ N  + K  +   F+ L    L  ++D+H P
Sbjct: 219 VEEDRVLSEKMELFQWITEE-NLDIKKQKSSSKFFKLAADELRRINDYHAP 268


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 237 LNEPEKFNTYSNVFGYIPVPKVTKQSFQHLKYSVEEDYQFLSELAALKAITEKVNEG 407
           L++ E+ +T  +       PK TK  +Q  +   EED Q  S    +K+  E + EG
Sbjct: 586 LSDEEEDDTNKSTSKSPKTPKNTKFGYQEFEGIDEEDAQDYSPSPLIKSFNELMFEG 642


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +3

Query: 186 RINQRFTNGGNKLINIMLNEPEKFNTYSNVFGYIPVPKVTKQSFQHLKYSVEEDY--QFL 359
           +I  R   GG   IN+++++ + FN Y  +FG   +  V     +   YS    Y   F 
Sbjct: 265 KIMSRSFKGG---INVVVSDLQMFNEYKRIFGPKVLSLVVTDGQEPDTYSENVHYTPNFK 321

Query: 360 SELAALKAITEKV 398
             LA L+A    +
Sbjct: 322 GALAYLEAYQNSI 334


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = +3

Query: 201 FTNGGNKLINIMLNEPEKFNTYSNVFGYIPV-PKVTKQSFQHLKYSVEEDYQFLSELAAL 377
           F   G+KLI++ L +  + +  S +   +   P +   +   + Y  +E  + L+    L
Sbjct: 315 FKKRGSKLISLELTDTARIHV-SVINAIVDCCPNLISLNLSRIFYLDDECVRLLAGCRNL 373

Query: 378 KAITEKVNEGVIKPDNVIDFYNLRFRSLHALS 473
            ++  +   G+I   +++D  N     LH LS
Sbjct: 374 VSLKIESPGGIINDGSILDVLNQIGSGLHTLS 405


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 420 DNVIDFYNLRFRSLHALSDFHGPHSLQT 503
           +N  +F+NL+F  L  L  FHG  + +T
Sbjct: 595 ENENNFWNLKFNLLTMLRSFHGSFTDET 622


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +3

Query: 3    TRENSEWNGLMITDPFNTPEAVVEVYIDGVSDLADAAK 116
            TR+  +W+G++  +  NT   +V+V++  +    D A+
Sbjct: 993  TRQTFQWHGVLKKNLRNTIRNIVKVFLTTLGACGDVAR 1030


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 487 GPWKSDRAWSERNLKL*KSITLSGL 413
           G W SD    E+NL + K I L GL
Sbjct: 257 GEWLSDSITKEQNLTINKEIGLCGL 281


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 333 SVEEDYQFLSELAALKAITEKVNEGVIKPDNV 428
           S+E+  QFLS +   K I  K N+  I P N+
Sbjct: 387 SIEQCIQFLSLIREQKEIFNKNNKEFINPLNI 418


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 327 KYSVEEDYQFLSELAALKAITEKVNEGVIKPDNVIDFYNLRFRSLHALSDF 479
           K +   D   L E+ +L  ++E  NE ++   N+ D Y  +FR LH + +F
Sbjct: 71  KLAKVSDATRLREVHSLLRLSE--NENIV---NIFDLYIDQFRCLHIVMEF 116


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 204 TNGGNKLINIMLNEPEKFNTYSNVF 278
           + GG++++N +L E +  N+  NVF
Sbjct: 613 SGGGDRVVNQLLTEMDGVNSKKNVF 637


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 333 SVEEDYQFLSELAALKAITE 392
           SV++D  FLSE+ ALK + E
Sbjct: 166 SVKQDRVFLSEIYALKILVE 185


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +3

Query: 150 EYEPDTFDAIRHRINQRFTNGGNKLINIMLNEPEKFNTYSNVFGY 284
           E E   FD +   +N +  N   KL     N   +F+ Y+N+  +
Sbjct: 440 EIEQPDFDVVLENLNLQTANVLPKLAEFRNNNFVRFSPYANITSF 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,810
Number of Sequences: 5004
Number of extensions: 36859
Number of successful extensions: 125
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)