Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D13
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0150 + 1191410-1191697,1191818-1191941,1192063-1192121,119...    28   5.1  
08_02_1632 + 28386956-28387042,28387120-28387185,28387354-283874...    27   6.7  
06_01_1180 + 10141850-10141959,10142096-10142621                       27   6.7  
02_02_0268 + 8422024-8422623                                           27   6.7  
01_01_0878 + 6888459-6889227,6890498-6890523,6891679-6891843,689...    27   6.7  

>03_01_0150 +
           1191410-1191697,1191818-1191941,1192063-1192121,
           1192565-1192629,1192838-1192931,1193005-1193085,
           1193176-1193287,1193949-1194036,1194440-1194561,
           1194636-1194973,1195579-1195870,1195946-1196016,
           1197741-1197849,1198760-1198803,1198804-1198847,
           1200431-1200524
          Length = 674

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 263 SIKLFRFIQHNIDQFIPTICKSLVYPMSDGIKCI 162
           ++ L  F+Q  +  F+PTIC    YP  D + CI
Sbjct: 578 ALHLSNFVQVGLMLFLPTICP---YPRQDEMDCI 608


>08_02_1632 +
           28386956-28387042,28387120-28387185,28387354-28387449,
           28387534-28387609,28387884-28387972,28388041-28388133,
           28390389-28390526,28390709-28390814,28391521-28391627
          Length = 285

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 6   RENSEWNGLMITDPFNTPEAVVEVYIDGVSDLAD 107
           + +S+ + L++ +PF+ P AV  + IDG  D  D
Sbjct: 79  QSSSKLDKLLLPNPFDRPRAVFLLQIDGFHDKDD 112


>06_01_1180 + 10141850-10141959,10142096-10142621
          Length = 211

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 111 AKLKSKNYHLIVDEYEPDTFDAIRHRINQRFTN--GGNKLINIMLNEPE 251
           AK+    YH +   +  +   AI   +N   T+  GG K++N+ + E +
Sbjct: 43  AKVALLLYHAVAAHFSEEALKAINGEVNTLATDGGGGGKVLNLTIEEDD 91


>02_02_0268 + 8422024-8422623
          Length = 199

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -2

Query: 116 FCSICKVRYSIYIYFNYSF--WS 54
           F ++C V Y + +YFNY +  WS
Sbjct: 39  FTAVCLVLYGVILYFNYLYVRWS 61


>01_01_0878 +
           6888459-6889227,6890498-6890523,6891679-6891843,
           6892415-6892494,6893001-6893154,6893808-6893864,
           6894103-6894170,6894238-6894344,6894475-6894542,
           6894885-6895007
          Length = 538

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 327 KYSVEEDYQFLSELAALKAITEKVNEGVIKPDNVIDFYNLRF-RSLHALSDFHGPHSLQT 503
           KYSVEE  QF   L ++     ++  GV++  +V+  Y     ++L AL D  G  SLQ 
Sbjct: 227 KYSVEEAEQF---LCSMLGDNSELGMGVVR--DVLGQYGCDVEKALDALLDISGMSSLQN 281

Query: 504 KE 509
            E
Sbjct: 282 ME 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,740,164
Number of Sequences: 37544
Number of extensions: 203055
Number of successful extensions: 515
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)