Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D13
(513 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL831918-1|CAD38579.1| 810|Homo sapiens hypothetical protein pr... 35 0.19
AJ586138-1|CAE51938.1| 3395|Homo sapiens ubiquitin-specific prot... 35 0.19
AB011142-1|BAA25496.2| 3412|Homo sapiens KIAA0570 protein protein. 35 0.19
BC040986-1|AAH40986.1| 837|Homo sapiens SLIT and NTRK-like fami... 33 0.77
AL713693-1|CAD28493.1| 689|Homo sapiens hypothetical protein pr... 33 0.77
AL080239-3|CAI41650.1| 837|Homo sapiens novel protein protein. 33 0.77
AK057619-1|BAB71535.1| 469|Homo sapiens protein ( Homo sapiens ... 33 0.77
BC029426-1|AAH29426.1| 251|Homo sapiens ABCA5 protein protein. 30 5.5
AY028897-1|AAK30022.1| 1642|Homo sapiens ATP-binding cassette A5... 30 5.5
AJ512612-1|CAD54757.1| 925|Homo sapiens ABCA5 transporter protein. 30 5.5
AJ275973-1|CAB93535.3| 1642|Homo sapiens ATP-binding cassette pr... 30 5.5
>AL831918-1|CAD38579.1| 810|Homo sapiens hypothetical protein
protein.
Length = 810
Score = 34.7 bits (76), Expect = 0.19
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 246 PEKFNTYSNVFGYIPVPKVTKQSFQHLKYSVEEDYQFLSELAALKAITEKVNEGVIK 416
PE NT ++FG + V +H+ + EE Y ++A +K I E ++E IK
Sbjct: 273 PELKNTVKSLFGGVITNNVVSLDCEHVSQTAEEFYTVRCQVADMKNIYESLDEVTIK 329
>AJ586138-1|CAE51938.1| 3395|Homo sapiens ubiquitin-specific
proteinase 34 protein.
Length = 3395
Score = 34.7 bits (76), Expect = 0.19
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 246 PEKFNTYSNVFGYIPVPKVTKQSFQHLKYSVEEDYQFLSELAALKAITEKVNEGVIK 416
PE NT ++FG + V +H+ + EE Y ++A +K I E ++E IK
Sbjct: 1844 PELKNTVKSLFGGVITNNVVSLDCEHVSQTAEEFYTVRCQVADMKNIYESLDEVTIK 1900
>AB011142-1|BAA25496.2| 3412|Homo sapiens KIAA0570 protein protein.
Length = 3412
Score = 34.7 bits (76), Expect = 0.19
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 246 PEKFNTYSNVFGYIPVPKVTKQSFQHLKYSVEEDYQFLSELAALKAITEKVNEGVIK 416
PE NT ++FG + V +H+ + EE Y ++A +K I E ++E IK
Sbjct: 1861 PELKNTVKSLFGGVITNNVVSLDCEHVSQTAEEFYTVRCQVADMKNIYESLDEVTIK 1917
>BC040986-1|AAH40986.1| 837|Homo sapiens SLIT and NTRK-like family,
member 4 protein.
Length = 837
Score = 32.7 bits (71), Expect = 0.77
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +3
Query: 252 KFNTYSNVFGYIPVPKVTKQSFQHLKYSVEED-YQFLSELAALKAITEKVNEGVI----K 416
+ N +N F Y+PV V Q + +E + + +L ALK EK+++G++ K
Sbjct: 500 RLNLRNNKFMYLPVSGVLDQLQSLTQIDLEGNPWDCTCDLVALKLWVEKLSDGIVVKELK 559
Query: 417 PDNVIDFYNLRFRSL 461
+ + F N+ +SL
Sbjct: 560 CETPVQFANIELKSL 574
>AL713693-1|CAD28493.1| 689|Homo sapiens hypothetical protein
protein.
Length = 689
Score = 32.7 bits (71), Expect = 0.77
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +3
Query: 252 KFNTYSNVFGYIPVPKVTKQSFQHLKYSVEED-YQFLSELAALKAITEKVNEGVI----K 416
+ N +N F Y+PV V Q + +E + + +L ALK EK+++G++ K
Sbjct: 352 RLNLRNNKFMYLPVSGVLDQLQSLTQIDLEGNPWDCTCDLVALKLWVEKLSDGIVVKELK 411
Query: 417 PDNVIDFYNLRFRSL 461
+ + F N+ +SL
Sbjct: 412 CETPVQFANIELKSL 426
>AL080239-3|CAI41650.1| 837|Homo sapiens novel protein protein.
Length = 837
Score = 32.7 bits (71), Expect = 0.77
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +3
Query: 252 KFNTYSNVFGYIPVPKVTKQSFQHLKYSVEED-YQFLSELAALKAITEKVNEGVI----K 416
+ N +N F Y+PV V Q + +E + + +L ALK EK+++G++ K
Sbjct: 500 RLNLRNNKFMYLPVSGVLDQLQSLTQIDLEGNPWDCTCDLVALKLWVEKLSDGIVVKELK 559
Query: 417 PDNVIDFYNLRFRSL 461
+ + F N+ +SL
Sbjct: 560 CETPVQFANIELKSL 574
>AK057619-1|BAB71535.1| 469|Homo sapiens protein ( Homo sapiens
cDNA FLJ33057 fis, clone TRACH1000144, weakly similar to
CHONDROADHERIN PRECURSOR. ).
Length = 469
Score = 32.7 bits (71), Expect = 0.77
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +3
Query: 252 KFNTYSNVFGYIPVPKVTKQSFQHLKYSVEED-YQFLSELAALKAITEKVNEGVI----K 416
+ N +N F Y+PV V Q + +E + + +L ALK EK+++G++ K
Sbjct: 132 RLNLRNNKFMYLPVSGVLDQLQSLTQIDLEGNPWDCTCDLVALKLWVEKLSDGIVVKELK 191
Query: 417 PDNVIDFYNLRFRSL 461
+ + F N+ +SL
Sbjct: 192 CETPVQFANIELKSL 206
>BC029426-1|AAH29426.1| 251|Homo sapiens ABCA5 protein protein.
Length = 251
Score = 29.9 bits (64), Expect = 5.5
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = +3
Query: 228 NIMLNEPEKFNTYSNVFGYIPVPKVTKQSFQHLKYSVEEDYQFLSELAALKAITEKVNEG 407
NI LN +KF + + GY PV +T Q + D E K E +
Sbjct: 63 NIELNPMDKFTLSNLILGYTPVTNITSSIMQKVSTDHLPDVIITEEYTNEK---EMLTSS 119
Query: 408 VIKPDNVI 431
+ KP N +
Sbjct: 120 LSKPSNFV 127
>AY028897-1|AAK30022.1| 1642|Homo sapiens ATP-binding cassette A5
protein.
Length = 1642
Score = 29.9 bits (64), Expect = 5.5
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = +3
Query: 228 NIMLNEPEKFNTYSNVFGYIPVPKVTKQSFQHLKYSVEEDYQFLSELAALKAITEKVNEG 407
NI LN +KF + + GY PV +T Q + D E K E +
Sbjct: 63 NIELNPMDKFTLSNLILGYTPVTNITSSIMQKVSTDHLPDVIITEEYTNEK---EMLTSS 119
Query: 408 VIKPDNVI 431
+ KP N +
Sbjct: 120 LSKPSNFV 127
>AJ512612-1|CAD54757.1| 925|Homo sapiens ABCA5 transporter protein.
Length = 925
Score = 29.9 bits (64), Expect = 5.5
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = +3
Query: 228 NIMLNEPEKFNTYSNVFGYIPVPKVTKQSFQHLKYSVEEDYQFLSELAALKAITEKVNEG 407
NI LN +KF + + GY PV +T Q + D E K E +
Sbjct: 63 NIELNPMDKFTLSNLILGYTPVTNITSSIMQKVSTDHLPDVIITEEYTNEK---EMLTSS 119
Query: 408 VIKPDNVI 431
+ KP N +
Sbjct: 120 LSKPSNFV 127
>AJ275973-1|CAB93535.3| 1642|Homo sapiens ATP-binding cassette
protein protein.
Length = 1642
Score = 29.9 bits (64), Expect = 5.5
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = +3
Query: 228 NIMLNEPEKFNTYSNVFGYIPVPKVTKQSFQHLKYSVEEDYQFLSELAALKAITEKVNEG 407
NI LN +KF + + GY PV +T Q + D E K E +
Sbjct: 63 NIELNPMDKFTLSNLILGYTPVTNITSSIMQKVSTDHLPDVIITEEYTNEK---EMLTSS 119
Query: 408 VIKPDNVI 431
+ KP N +
Sbjct: 120 LSKPSNFV 127
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,219,738
Number of Sequences: 237096
Number of extensions: 1106714
Number of successful extensions: 2159
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2159
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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