Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D12
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    28   0.79 
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    28   1.0  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    26   4.2  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   7.3  

>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 341 LSIMSSLRWMIKKYSF*FLAFCRAKIWIKNEK*IYFCFYINHF 213
           L I   +   I K+ F F + C  K W +    +Y+C YI+ F
Sbjct: 84  LLIFEQVAPAIYKHGF-FFSICNEKAWTQPLVFLYYCAYISKF 125


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 512 WQCFCGIWYPHYQYHPEVFLRLVKYIP 432
           W+   G W PH+  + E F+  V Y+P
Sbjct: 40  WEQINGEWTPHFYENHEGFVNCVCYVP 66


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +1

Query: 265 ILALQKARN*KEYFFIIHLKLLMILRKCKLGYVKLSLNLC*HSHPNLVKLCKHKQ 429
           +  L  + N +E F  +  +   ++ +    Y   +++LC    PNLV+ C++ Q
Sbjct: 84  VWTLSSSSNERESFENLIFEHACLIYRLACTYHTTAISLCNEKPPNLVQACQYFQ 138


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 258 NPNFGPTEGEELKRILFYHPSQTT-HDTQKMQVGLCEAVIKFMLTFSPEPCEALQTQTKR 434
           NPNF P   E+    L   P Q + +DT   Q  + ++ ++F     P P + + +    
Sbjct: 252 NPNF-PQYTEKPALTLLQSPKQNSNYDTSNFQNSVSDSSMQFTNEGMPSPVKGIMSSDDA 310

Query: 435 YIF 443
             F
Sbjct: 311 VAF 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,414
Number of Sequences: 5004
Number of extensions: 42142
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)