Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D12
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476...    54   6e-08

>08_02_0733 +
           20546072-20546325,20546924-20547017,20547441-20547624,
           20547722-20547831,20548328-20548423,20548525-20548679,
           20548743-20548986,20549159-20549314,20549600-20549829,
           20552213-20552316,20552420-20552505,20552776-20553066,
           20553383-20553475,20553640-20553735,20553838-20553939,
           20554196-20554266,20554784-20555035,20555786-20556529,
           20557038-20557119,20557192-20557347,20557446-20557655,
           20558282-20558665
          Length = 1397

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 26/103 (25%)
 Frame = +3

Query: 252 IFNPNFGPTEGEELKRILFYHPSQTTHDTQKMQVGLCEAVIKF---------MLT----- 389
           +F+   G  EG+EL +ILF+HP+      Q   +GLCE +I F         +LT     
Sbjct: 16  VFDLRRGQQEGQELDKILFFHPTDCPILLQLSVIGLCEGIITFARFAVLLHPLLTRIPLL 75

Query: 390 -----------FSP-EPCEALQTQTKRYIFYQPEKDFWMVLVV 482
                      FSP + CE ++++   ++FYQ E D WMVLVV
Sbjct: 76  FVLLLGSSRRIFSPDDDCEVIESEKHSHVFYQAEADIWMVLVV 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,180,644
Number of Sequences: 37544
Number of extensions: 216076
Number of successful extensions: 418
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)