Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D12
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81094-4|CAB03152.1|  528|Caenorhabditis elegans Hypothetical pr...    41   7e-04
Z81461-1|CAB03833.1|  944|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U28739-12|AAB93454.1|  200|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z81094-4|CAB03152.1|  528|Caenorhabditis elegans Hypothetical
           protein F58G11.6 protein.
          Length = 528

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 246 FFIFNPNFGPTEGEELKRILFYHPSQTTHDTQKMQVGLCEAVIKFMLTF 392
           FF+ +P  G  EGEE  R++++HP     + Q    G  EAV+ F   F
Sbjct: 34  FFVAHPLSGRKEGEEHNRVMYFHPKGEQLERQTEITGFAEAVVNFTENF 82


>Z81461-1|CAB03833.1|  944|Caenorhabditis elegans Hypothetical
           protein C04F12.1 protein.
          Length = 944

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 288 ELKRILFY--HPSQTTHDTQKMQVGLCEAV 371
           ++K I+ Y  H S+ TH T K+Q  LCE +
Sbjct: 585 QVKPIVIYADHTSEGTHSTLKLQERLCEVI 614


>U28739-12|AAB93454.1|  200|Caenorhabditis elegans Hypothetical
           protein C17G10.7 protein.
          Length = 200

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -1

Query: 307 KSILFNSSPSVGPKFGLKMKNEFIFVFTSIILIFFIC-IHYY*SIFFGI--KLGLRA 146
           K IL +S+   G +      N  IFV+ +I ++FFI  IH   S  F I  +L LRA
Sbjct: 85  KIILSSSALFYGLQMAETTSNSAIFVWLTISIVFFILEIHTMFSTTFDIIKQLNLRA 141


>Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical
           protein D2005.5 protein.
          Length = 1119

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 237 INSFFIFNPNFGPTEGEELKRILFYHPSQTTHDTQKMQVGLCEAVIK 377
           I  F +F   F P + EE+ R++   P+  +HD   +++   +  +K
Sbjct: 49  IGYFKLFESLFPPGKLEEIARMIIDEPTPVSHDPDMIKIRNADLDVK 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,601,309
Number of Sequences: 27780
Number of extensions: 229077
Number of successful extensions: 544
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)