Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D11
(510 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 74 1e-14
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 59 3e-10
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 34 0.014
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 27 1.6
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 27 2.2
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 26 2.9
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 26 2.9
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 26 3.8
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 25 5.0
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 8.7
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 25 8.7
SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu... 25 8.7
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 25 8.7
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 74.1 bits (174), Expect = 1e-14
Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 5/159 (3%)
Frame = +1
Query: 49 KLIGLTTGNGNTNEDNVCVNNEKILKVAGRQDVPIYRGAKVSLVTTPI-ADDYYGKDGLG 225
+L+G+TT GN N ++L +AGR D+P+Y G+ L+ PI A +G G
Sbjct: 27 ELLGVTTVAGNVPVSMTTRNALQMLDLAGRPDIPVYAGSNKPLLRAPITATHVHGASGF- 85
Query: 226 DSGDVYTDLVSAQNDS-AVNALI-TLSKKYQGSLSVITIGPLTNVALAIKYDSDFLNRLE 399
G V +N+ AV+ +I TL G++++ TIGPLTN+ALA+ + + R +
Sbjct: 86 -EGAVLPPPSRKENEGHAVDFIIDTLRNNEPGTITICTIGPLTNIALALNKAPEVIQRAK 144
Query: 400 HLYIGAGHIHNEQFSQP--EFNAHMDVEAYRIIAQNASP 510
+ + AG P EFN ++D A +++ + P
Sbjct: 145 QIVMMAGAFSEVGNITPAAEFNIYVDPHAAQMVLSSGIP 183
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 59.3 bits (137), Expect = 3e-10
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 2/155 (1%)
Frame = +1
Query: 49 KLIGLTTGNGNTNEDNVCVNNEKILKVAGRQDVPIYRGAKVSLVT-TPIADDYYGKDGLG 225
K++G++T +GNT + N ++++ QDV ++ GA L+ + A +G +GL
Sbjct: 43 KILGVSTVHGNTTLEFTTKNALAVMELLN-QDVDVHAGAAKPLMRESAFATHIHGTNGLA 101
Query: 226 DSGDVYTDLVSAQNDSAVNALITLSKKYQGSLSVITIGPLTNVALAI-KYDSDFLNRLEH 402
+ AV A+ T Y ++++ GPLTN+AL + Y S N
Sbjct: 102 GISLLPDYPKKKATPDAVFAMYTTISNYPEPVTLVATGPLTNIALLLATYPSVTDNIERF 161
Query: 403 LYIGAGHIHNEQFSQPEFNAHMDVEAYRIIAQNAS 507
+++G SQ EFN + D EA R++ + S
Sbjct: 162 IFMGGSTGIGNITSQAEFNVYADPEAARLVLETKS 196
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 33.9 bits (74), Expect = 0.014
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +1
Query: 271 SAVNALITLSKKYQGSLSVITIGPLTNVALAIKYDSDFLNRLEHLYIGAGHIHNE 435
SA +I + K ++++ GP+TN+A+A+ D + L I G++ ++
Sbjct: 135 SAAQFIIDMVKANPNEITIVAAGPMTNLAIALSIWPDLAKNTKSLVIMGGYVDSQ 189
>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 465
Score = 27.1 bits (57), Expect = 1.6
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -1
Query: 498 LCNNSVRLNIHMCIEFWLRKLFIVNVSSSNVQMFQPIQEI*VILNC*CYVGQWSNS 331
LCN+ + F+L F + SSS +Q+++P+ + C YVG NS
Sbjct: 43 LCNSGKKFLQISNASFFLPACFYLLGSSSIIQLYEPLLWLSSFPFCILYVGFGENS 98
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 136 RQDVPIYRGAKVSLVTTPIADDYYGKDG--LGDSGDVYTDLVSAQNDSA 276
R+D P+ G + L+ ++Y G +GDSG VY D +D+A
Sbjct: 28 RRDDPL-NGRQFGLLALHSGNEYVHLHGFYVGDSGSVYLDPADGTDDAA 75
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 384 LESAGTSVHWSWTHSQ*TVFSARIQC 461
L GTS+ WSW HS V + + C
Sbjct: 329 LTLGGTSLSWSWRHSGRIVSACQEYC 354
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.2 bits (55), Expect = 2.9
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +1
Query: 106 NNEKILKVAGRQDVPIYRGAKVSLVTTPIADDYYGKDGLGDSGDVYTDLVSAQND 270
N + LKV D P+Y + ++ Y + L + V DL+ A ND
Sbjct: 469 NQQASLKVMHSYDPPLYNDTRAWMIYEENLPSYLSSNFLKEEPVVLFDLLRALND 523
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 253 VSAQNDSAVNALITLSKKYQGSLSVITIGPLTNVALAIKYDSDFL 387
VS + VN ++ KYQ +G L N+ Y SD+L
Sbjct: 197 VSLAVSNFVNLIVIREPKYQKFAYGKAVGKLKNIVFEHGYSSDYL 241
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 25.4 bits (53), Expect = 5.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 105 DTHVVFICIAIASR 64
DTHV+ IC A+ SR
Sbjct: 84 DTHVIMICFAVDSR 97
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 8.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 272 VLLMLLSLFLKNIKDLYL*SLLD 340
+ +M++ +FL+N+ +LY S LD
Sbjct: 378 ITIMVIIIFLRNLAELYTTSSLD 400
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 24.6 bits (51), Expect = 8.7
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +1
Query: 340 PLTNVALAIKYDSDFLNRLEHLYIGAGHIHNEQFSQPEFNAHMDVEAYRIIAQNA 504
P+ N+ + K + D R+ + + + + S PE NA+ D+ A ++ +QN+
Sbjct: 23 PMNNLKSSPK-NKDSEKRINNSIAESEQVVDSALSNPETNANEDIIAPQLPSQNS 76
>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 137
Score = 24.6 bits (51), Expect = 8.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 187 PIADDYYGKDGLGDSGDVYTDLVSAQNDSAVNALITLSK 303
PI++ Y G G Y DL+ +ND AL L K
Sbjct: 22 PISNAYVHLSGYRKYGLRYDDLMLEENDDTQKALSRLPK 60
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 24.6 bits (51), Expect = 8.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 25 YEEYFDGPKLIGLTTGNGNTNED 93
Y++ D PKL+ L TG G E+
Sbjct: 269 YDKTLDTPKLLVLITGKGPMKEE 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.135 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,124,732
Number of Sequences: 5004
Number of extensions: 41616
Number of successful extensions: 103
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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