Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D11
(510 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23139-5|AAN65330.1| 374|Caenorhabditis elegans Hypothetical pr... 87 7e-18
AL032637-12|CAA21614.1| 338|Caenorhabditis elegans Hypothetical... 73 9e-14
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 29 2.6
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z81127-4|CAB03389.1| 344|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z70783-3|CAA94853.4| 755|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z68215-14|CAL49436.1| 394|Caenorhabditis elegans Hypothetical p... 28 4.5
U40800-15|AAA81499.1| 158|Caenorhabditis elegans Hypothetical p... 27 6.0
Z81111-7|CAB03270.1| 342|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z81099-5|CAB03190.1| 342|Caenorhabditis elegans Hypothetical pr... 27 7.9
>U23139-5|AAN65330.1| 374|Caenorhabditis elegans Hypothetical
protein F13H8.3 protein.
Length = 374
Score = 87.0 bits (206), Expect = 7e-18
Identities = 57/160 (35%), Positives = 93/160 (58%), Gaps = 12/160 (7%)
Frame = +1
Query: 49 KLIGLTTGNGNTNEDNVCVNNEKILKVAGRQDVPIYRGAKVSLVTT-PIA--DDYYGKDG 219
++I +TT +G + N ++L+ G+ +VP++ GA+ SLV PI ++ +G DG
Sbjct: 49 EVIAITTVHGGVTANQSAANVARLLRAIGKHNVPVFIGAQDSLVPKGPIQVWEELFGSDG 108
Query: 220 LGDSGDVY-----TDLVSAQNDSAVNALITLSKKYQGSLSVITIGPLTNVALAIKYDSDF 384
+G DV +D SAQ +AV+A+I L+K + + ++ +GPLTN+A+AI+ D D
Sbjct: 109 IGGVPDVEPKTLPSDFNSAQVGNAVDAIINLTKSTK-DIILVGLGPLTNIAMAIRKDPDI 167
Query: 385 LNRLEHLYIGAGH---IHNEQF-SQPEFNAHMDVEAYRII 492
R++ + I G+ + N QF S EFN MD EA I+
Sbjct: 168 SKRVKQVVIMGGNYLGVGNTQFNSTAEFNFLMDPEAAHIV 207
>AL032637-12|CAA21614.1| 338|Caenorhabditis elegans Hypothetical
protein Y43F8C.13 protein.
Length = 338
Score = 73.3 bits (172), Expect = 9e-14
Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 11/159 (6%)
Frame = +1
Query: 49 KLIGLTTGNGNTNEDNVCVNNEKILKVAGRQDVPIYRGAKVSLVTTPIAD---DYYGKDG 219
+++ T +G D C N ++ ++ R ++P+Y+GA S+++ P D D++G DG
Sbjct: 32 EILAFTAVHGCVTVDQACANIKRTIRANDRSNIPVYKGAAKSILSLPKDDTVSDFFGIDG 91
Query: 220 LGDSGDVYTDL----VSAQNDSAVNALITLSKKYQGSLSVITIGPLTNVALAIKYDSDFL 387
+GD + + + + A ALI + ++ + + +++TIGPLTNVA+A++ +F
Sbjct: 92 IGDKPEEFPKVERSDFEGEGKHASLALIDILRENRDA-TLVTIGPLTNVAIALQLCEEFS 150
Query: 388 NRLEHLYIGAGHIHN----EQFSQPEFNAHMDVEAYRII 492
L I G+ + + S E+N H D EA I+
Sbjct: 151 TYPSRLVIMGGNYYAVGNVDGGSSAEYNFHGDPEAASIV 189
>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical
protein ZC116.3 protein.
Length = 3871
Score = 28.7 bits (61), Expect = 2.6
Identities = 26/76 (34%), Positives = 35/76 (46%)
Frame = +1
Query: 58 GLTTGNGNTNEDNVCVNNEKILKVAGRQDVPIYRGAKVSLVTTPIADDYYGKDGLGDSGD 237
G + GN +D+ CV N K K+A + A V T D Y G DG+G+ G
Sbjct: 283 GYSGDGGNCVKDDSCVKN-KCHKLATCKVTDDGYSA-VGDYTCYCPDGYVG-DGIGEEGC 339
Query: 238 VYTDLVSAQNDSAVNA 285
V + QN + VNA
Sbjct: 340 VKSASNVCQNHNCVNA 355
>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical
protein ZC116.3 protein.
Length = 3871
Score = 28.7 bits (61), Expect = 2.6
Identities = 26/76 (34%), Positives = 35/76 (46%)
Frame = +1
Query: 58 GLTTGNGNTNEDNVCVNNEKILKVAGRQDVPIYRGAKVSLVTTPIADDYYGKDGLGDSGD 237
G + GN +D+ CV N K K+A + A V T D Y G DG+G+ G
Sbjct: 283 GYSGDGGNCVKDDSCVKN-KCHKLATCKVTDDGYSA-VGDYTCYCPDGYVG-DGIGEEGC 339
Query: 238 VYTDLVSAQNDSAVNA 285
V + QN + VNA
Sbjct: 340 VKSASNVCQNHNCVNA 355
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 474 NIHMCIEFWLRKLFIVNVSSSNVQMFQPI 388
N+HM IEF R +V +SS N+ ++ I
Sbjct: 5717 NVHMVIEFPARSQEVVKISSENLILYDMI 5745
>Z81127-4|CAB03389.1| 344|Caenorhabditis elegans Hypothetical
protein T22G5.4 protein.
Length = 344
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 22 LYEEYFDGPKLIGLTTG---NGNTNEDNVCVNNEKILKVAGRQDVPIYRG 162
+Y + FDGP+L G +G + TN+ +++K K + ++ V IY G
Sbjct: 292 MYPDVFDGPELRGGESGSKQDSATNQQVRADSDKKQKKGSSKKTVRIYEG 341
>Z70783-3|CAA94853.4| 755|Caenorhabditis elegans Hypothetical
protein ZK856.5 protein.
Length = 755
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 181 TTPIADDYYGKDGLGDSGDVYTDLVSAQNDSAVNALITLSKKY 309
+TP +Y KD G +GD+ +SA D N TL KKY
Sbjct: 353 STPFVFEYSFKDAYGITGDINPTTMSALLDKMKNN-DTLFKKY 394
>Z68215-14|CAL49436.1| 394|Caenorhabditis elegans Hypothetical
protein C53B4.7e protein.
Length = 394
Score = 27.9 bits (59), Expect = 4.5
Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 5/146 (3%)
Frame = +1
Query: 49 KLIGLTTGNGNTNEDNVCVNNEKILKVAGRQDVPIYRGAKVSLVTTPIADD-YYGKDGLG 225
K+ T NGN C+ + ++ +R KV+L+T D Y + L
Sbjct: 7 KIFCQTCSNGNNQGLEACIGMSHEVSTTPAAELAAFRARKVALITGISGQDGSYLAELLL 66
Query: 226 DSGDVYTDLV---SAQNDSAVNALITLSKKYQGSLSV-ITIGPLTNVALAIKYDSDFLNR 393
G ++ S+ N + + L + + G S + G +T+ + IK S +
Sbjct: 67 SKGYKVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLHYGDMTDSSCLIKLIST-IEP 125
Query: 394 LEHLYIGAGHIHNEQFSQPEFNAHMD 471
E ++ A F PE+ A +D
Sbjct: 126 TEVYHLAAQSHVKVSFDLPEYTAEVD 151
>U40800-15|AAA81499.1| 158|Caenorhabditis elegans Hypothetical
protein D2096.1 protein.
Length = 158
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 271 SAVNALITLSKKYQGSLSVITIGPLTNVALAIKYDSDFLNRLEHLYIG--AGHIH 429
S ++ + ++K + S++ I G LT LAI+ RLE + +G G++H
Sbjct: 18 STIDCCLVANRKKEDSINSIVSGGLTGALLAIRSPKMERIRLEVIELGELMGYVH 72
>Z81111-7|CAB03270.1| 342|Caenorhabditis elegans Hypothetical
protein T01G5.5 protein.
Length = 342
Score = 27.1 bits (57), Expect = 7.9
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -2
Query: 155 YIGTSCLPATFNIFSL--LTHTLSS-FVLPLPVVRPINLGPSKYSSYNSDIN 9
Y T LP F I L ++ TL S F P+ V +GP Y S+ DIN
Sbjct: 128 YFDTKFLPLWFMIPILGGVSWTLVSWFCFPMNPVTSGYIGPDLYESFKLDIN 179
>Z81099-5|CAB03190.1| 342|Caenorhabditis elegans Hypothetical
protein T01G5.5 protein.
Length = 342
Score = 27.1 bits (57), Expect = 7.9
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -2
Query: 155 YIGTSCLPATFNIFSL--LTHTLSS-FVLPLPVVRPINLGPSKYSSYNSDIN 9
Y T LP F I L ++ TL S F P+ V +GP Y S+ DIN
Sbjct: 128 YFDTKFLPLWFMIPILGGVSWTLVSWFCFPMNPVTSGYIGPDLYESFKLDIN 179
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.135 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,715,291
Number of Sequences: 27780
Number of extensions: 232923
Number of successful extensions: 400
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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