Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D11
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.60 
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            23   1.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   3.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +3

Query: 132 WKTRCSYIQRSEGFPGDNTH 191
           W  RC ++Q    +  DN H
Sbjct: 926 WSCRCKFLQELSSWVSDNAH 945


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 144 ILSSSHFQYLFIIDTHVVFICIA 76
           I+ +SHF+  +++   + F C+A
Sbjct: 24  IVKASHFELDYMLGRKITFFCMA 46


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 315 ISICDHYWTIDQRSISN 365
           I +CD  W +D   I+N
Sbjct: 127 IDMCDRLWVLDSGLINN 143


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = +1

Query: 370 YDSDFLNRLEHLYIGAGHIHNEQFSQPEF 456
           YDS ++ ++++   G+ H+    +  PE+
Sbjct: 321 YDSTYIPKVKNKKAGSKHLLQNTWLDPEY 349


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 336 NSDHR*RSLIFFRKSDKSIN 277
           N DH   ++I +R +D SIN
Sbjct: 420 NIDHAKNTIIDYRNNDLSIN 439


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 61  LTTGNGNTNEDNVCVNN 111
           +T GN NTN  N   NN
Sbjct: 228 ITAGNANTNASNNNNNN 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.135    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,305
Number of Sequences: 438
Number of extensions: 3000
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)