Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D10
         (398 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY358491-1|AAQ88855.1|  139|Homo sapiens GLLV3061 protein.             31   1.4  
X72631-1|CAB53540.1|  614|Homo sapiens Rev-ErbAalpha protein pro...    29   7.5  
M24898-1|AAA52335.1|  614|Homo sapiens triiodothyronine receptor...    29   7.5  
DQ840856-1|ABI74383.1|  118|Homo sapiens immunoglobulin heavy ch...    29   7.5  
BC056148-1|AAH56148.1|  614|Homo sapiens nuclear receptor subfam...    29   7.5  
BC047875-1|AAH47875.1|  614|Homo sapiens nuclear receptor subfam...    29   7.5  
BC028136-1|AAH28136.1|  549|Homo sapiens zinc finger protein 34 ...    29   7.5  
BC004480-1|AAH04480.1|  539|Homo sapiens ZNF34 protein protein.        29   7.5  
AF231397-1|AAF75630.1|  131|Homo sapiens immunoglobulin heavy ch...    28   9.9  

>AY358491-1|AAQ88855.1|  139|Homo sapiens GLLV3061 protein.
          Length = 139

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 129 CRRGLILSVRVRSGVQWKRGS*LAGV 206
           CRRGL+L V  + G  W+RG   AG+
Sbjct: 83  CRRGLLLGVEGQMGFGWERGGMWAGL 108


>X72631-1|CAB53540.1|  614|Homo sapiens Rev-ErbAalpha protein
           protein.
          Length = 614

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 209 QQIKPPEKTLAPQPTVKGLLSRFGSQAQALFAPKKPRFGSS 331
           QQ+ PP ++ +P+PTV+ ++S+     + +F     + GSS
Sbjct: 271 QQLTPP-RSPSPEPTVEDVISQVARAHREIFTYAHDKLGSS 310


>M24898-1|AAA52335.1|  614|Homo sapiens triiodothyronine receptor
           protein.
          Length = 614

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 209 QQIKPPEKTLAPQPTVKGLLSRFGSQAQALFAPKKPRFGSS 331
           QQ+ PP ++ +P+PTV+ ++S+     + +F     + GSS
Sbjct: 271 QQLTPP-RSPSPEPTVEDVISQVARAHREIFTYAHDKLGSS 310


>DQ840856-1|ABI74383.1|  118|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 118

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 295 SVRTEETTVWFIGRDPQAP*DQVV 366
           S+R E+T V++ GRDP  P   VV
Sbjct: 84  SLRVEDTAVYYCGRDPGLPNGMVV 107


>BC056148-1|AAH56148.1|  614|Homo sapiens nuclear receptor subfamily
           1, group D, member 1 protein.
          Length = 614

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 209 QQIKPPEKTLAPQPTVKGLLSRFGSQAQALFAPKKPRFGSS 331
           QQ+ PP ++ +P+PTV+ ++S+     + +F     + GSS
Sbjct: 271 QQLTPP-RSPSPEPTVEDVISQVARAHREIFTYAHDKLGSS 310


>BC047875-1|AAH47875.1|  614|Homo sapiens nuclear receptor subfamily
           1, group D, member 1 protein.
          Length = 614

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 209 QQIKPPEKTLAPQPTVKGLLSRFGSQAQALFAPKKPRFGSS 331
           QQ+ PP ++ +P+PTV+ ++S+     + +F     + GSS
Sbjct: 271 QQLTPP-RSPSPEPTVEDVISQVARAHREIFTYAHDKLGSS 310


>BC028136-1|AAH28136.1|  549|Homo sapiens zinc finger protein 34
           protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 300 SHRRNHGLVHRSRSTSSVRPSG 365
           S+  NH  VHRS+ T++VR SG
Sbjct: 197 SYLNNHKRVHRSKKTNTVRNSG 218


>BC004480-1|AAH04480.1|  539|Homo sapiens ZNF34 protein protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 300 SHRRNHGLVHRSRSTSSVRPSG 365
           S+  NH  VHRS+ T++VR SG
Sbjct: 187 SYLNNHKRVHRSKKTNTVRNSG 208


>AF231397-1|AAF75630.1|  131|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 131

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 295 SVRTEETTVWFIGRDPQAP*DQVV 366
           S+R E+T V++  +DP+ P D VV
Sbjct: 85  SLRAEDTAVYYCAKDPRTPPDIVV 108


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,497,952
Number of Sequences: 237096
Number of extensions: 1326324
Number of successful extensions: 6535
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6535
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)