Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D10
         (398 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.7  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    21   6.9  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   6.9  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   6.9  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   6.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 279  AARLRLCSHRRNHGLVHRSRSTSSVRPSGLNMMNRTYFV 395
            AA LRLC H R+   V R+ + + V    ++   R   V
Sbjct: 1092 AAGLRLCLHHRDLPCVLRASTPAPVVLEAVHASRRVLIV 1130


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -1

Query: 335 RPMNQTVVSSVRTEPE 288
           RP N+T++++V +E +
Sbjct: 117 RPQNETILTTVSSEAD 132


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -1

Query: 335 RPMNQTVVSSVRTEPE 288
           RP N+T++++V +E +
Sbjct: 165 RPQNETILTTVSSEAD 180


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -1

Query: 335 RPMNQTVVSSVRTEPE 288
           RP N+T++++V +E +
Sbjct: 165 RPQNETILTTVSSEAD 180


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -1

Query: 335 RPMNQTVVSSVRTEPE 288
           RP N+T++++V +E +
Sbjct: 165 RPQNETILTTVSSEAD 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,850
Number of Sequences: 438
Number of extensions: 2234
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)