Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D09
(370 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 28 0.53
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 27 0.93
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 25 2.8
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 24 6.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 24 6.5
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce... 24 6.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 24 6.5
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 24 8.6
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po... 24 8.6
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 24 8.6
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 27.9 bits (59), Expect = 0.53
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 76 FRYVILKKNYLKISILIPDMVVNFLYCVFFYVDQGSSTVRK*KYSLHPN--*ISQSLGCV 249
F VIL +N + IS+ I +V + +F Y D+ +K KY+ P IS LG V
Sbjct: 505 FTGVILFQNLVPISLYISIEIVKTIQAIFIYFDK-DMYYKKLKYACTPKSWNISDDLGQV 563
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 0.93
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 362 NITFTIPTGW*MTTFFVKNIQHKQTYSLREKSFITLLVTHPKDWL 228
++ +TIPTG T + + KQ Y+L +K I +L P +L
Sbjct: 207 HVLYTIPTGQNPTGSTLSVERRKQIYTLAQKHDIIILEDEPYYYL 251
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 25.4 bits (53), Expect = 2.8
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +1
Query: 97 KNYLKISILIPDMVVNFLYCVFFYVDQGSSTVRK*KYSLHPN*ISQSLGCVTNNVIKDFS 276
+NYL ++ L P++ F+Y + + D+ S++ K +L + S SLG V +
Sbjct: 530 QNYLLVNYLGPEIPKQFIYSI--HEDKVSTSNDHSKNNLPSDSSSTSLGKVKLELCNSLE 587
Query: 277 LNE 285
NE
Sbjct: 588 TNE 590
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 24.2 bits (50), Expect = 6.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 121 LIPDMVVNFLYCVFFYVDQ 177
LIP +V++FLY Y Q
Sbjct: 149 LIPSLVISFLYITLVYCPQ 167
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 24.2 bits (50), Expect = 6.5
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 130 DMVVNFLYCVFFYVDQGSSTVRK-*KYSLHP 219
+MV +C FYV + +ST R+ Y LHP
Sbjct: 1362 EMVARQTFCTNFYVLRETSTARENIFYFLHP 1392
>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 456
Score = 24.2 bits (50), Expect = 6.5
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 178 LDLHRKKHNIKNLQPYLGLKLIFLDNFFS 92
LDL+ +H+I P L ++L + F+
Sbjct: 110 LDLNTYRHSISRAHPALSYNKVYLQHLFA 138
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 24.2 bits (50), Expect = 6.5
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 130 DMVVNFLYCVFFYVDQGSSTVRK-*KYSLHP 219
+MV +C FYV + +ST R+ Y LHP
Sbjct: 1362 EMVARQTFCTNFYVLRETSTARENIFYFLHP 1392
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 23.8 bits (49), Expect = 8.6
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = -2
Query: 324 NLFRK-KHTT*TNVF--VEREIFYHIISD 247
N+ R+ KH N+F VE E FYH++ +
Sbjct: 114 NIMRRVKHKNVVNLFDFVETEDFYHLVME 142
>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 368
Score = 23.8 bits (49), Expect = 8.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 21 DKHILCQKMLTIFYF*IAFSLRHFEKKLSKNINFNPRYGCKFF 149
DK +LC+K LTI Y +L E ++N+ F + +F+
Sbjct: 105 DKAVLCEKPLTINY---PEALELVELARARNLFFAEGFWIRFY 144
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 23.8 bits (49), Expect = 8.6
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 185 LLLENKSIPYIQTELASLWGVSL-IM**KISLSTNTFVYVVCFLRKRLSFTIPLVW 349
LL++ KS+ Y + LA L + L I+ ++ T+T VY++ RL + I +W
Sbjct: 811 LLIQKKSLTY-SSFLAFLVKLCLDIVLTPQNIKTSTDVYIIQTWALRLLYQITSIW 865
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,617,200
Number of Sequences: 5004
Number of extensions: 32697
Number of successful extensions: 83
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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