Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D09
(370 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-71... 34 0.030
11_01_0088 - 662984-663024,663743-663774,664079-664503,665048-66... 30 0.49
12_02_0144 + 14364255-14364881,14364898-14364957 29 1.5
11_01_0705 - 5795976-5796051,5796450-5796518,5796632-5796780,579... 28 2.0
08_02_0678 - 19971416-19971930,19971970-19973347,19974122-199745... 28 2.6
11_01_0699 - 5757410-5757458,5757760-5757831,5758084-5758152,575... 27 6.1
01_06_1489 + 37728539-37729496,37730362-37730900 27 6.1
11_01_0702 - 5782202-5782277,5782692-5782760,5782878-5783026,578... 26 8.1
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575... 26 8.1
01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078 26 8.1
>12_01_0089 -
707260-707317,707626-708050,708663-709621,710223-710408,
710502-710604,710701-710883,710932-711012,711072-711164,
711650-711832,713751-713966
Length = 828
Score = 34.3 bits (75), Expect = 0.030
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +1
Query: 244 CVTNNVIKDFSLNEYVCLCCMFFTKKV---VIYHPVG 345
C+ N+I D S N++ LC + F +K+ +IYH +G
Sbjct: 139 CIVQNIIVDISFNQFGGLCTLCFLEKIYLGLIYHKLG 175
>11_01_0088 -
662984-663024,663743-663774,664079-664503,665048-666006,
666661-666846,666942-667044,667141-667323,667514-667606,
668092-668274,669011-669031
Length = 741
Score = 30.3 bits (65), Expect = 0.49
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 244 CVTNNVIKDFSLNEYVCLCCMFFTKKV 324
C+ N+I D S N++ LC + F +KV
Sbjct: 74 CIVQNIIVDISFNQFGGLCTLCFLEKV 100
>12_02_0144 + 14364255-14364881,14364898-14364957
Length = 228
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 81 LRHFEKKLSKNINFNPRYGCKFFILCF 161
++H+E+ N F+P +GC+FF LC+
Sbjct: 48 VKHYEED---NGGFDPHWGCEFFRLCW 71
>11_01_0705 -
5795976-5796051,5796450-5796518,5796632-5796780,
5796875-5797006,5797128-5797450,5798166-5798172,
5799126-5799180,5799685-5799740,5799862-5800029,
5800912-5801097,5801269-5801419,5801515-5801743,
5802277-5802532,5802793-5802894
Length = 652
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 262 IKDFSLNEYVCLCCMFFTKKVVIYHPVGMV 351
+ DF L + + C+ +K+VVI H G+V
Sbjct: 609 VLDFELGQVTAIICLKGSKRVVIGHDAGLV 638
>08_02_0678 - 19971416-19971930,19971970-19973347,19974122-19974518,
19974533-19974645,19977436-19977903,19977935-19978059,
19978192-19978452,19984254-19984647
Length = 1216
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 84 RHFEKKLSKNINFNPRYGCKFFILCF 161
RH+E+ N F+P +GC FF C+
Sbjct: 1021 RHYEED---NSGFDPHWGCVFFSFCW 1043
>11_01_0699 -
5757410-5757458,5757760-5757831,5758084-5758152,
5758329-5758477,5758568-5758699,5758784-5759109,
5759330-5759399,5759684-5759738,5760322-5760377,
5760500-5760700,5761466-5761651,5761756-5761906,
5761978-5762206,5762321-5762582,5762858-5762959
Length = 702
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 262 IKDFSLNEYVCLCCMFFTKKVVIYHPVGMV 351
+ DF L + + C+ +K+VVI H G+V
Sbjct: 644 VLDFELGKVGAIVCLKGSKRVVIGHQAGLV 673
>01_06_1489 + 37728539-37729496,37730362-37730900
Length = 498
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 226 ISQSLGCVTNNVIKDFSLNEYVCLCCMFFTKKVVIYHPVGMV 351
I SL + N+ SL + CL +FF K VI GM+
Sbjct: 268 IDSSLAVLNTNICAATSLLVWTCLDVIFFKKPSVIGAVQGMI 309
>11_01_0702 -
5782202-5782277,5782692-5782760,5782878-5783026,
5783119-5783250,5783343-5783671,5784166-5784172
Length = 253
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 262 IKDFSLNEYVCLCCMFFTKKVVIYHPVGMV 351
+ DF L + + C+ +K+V I H G+V
Sbjct: 210 VLDFELGKVTAIVCLKGSKRVAIGHDAGLV 239
>03_02_0124 -
5749183-5749773,5750628-5751160,5751191-5753035,
5753632-5753820,5753911-5754013,5754087-5754269,
5754392-5754484,5755031-5755219,5756133-5756327
Length = 1306
Score = 26.2 bits (55), Expect = 8.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 244 CVTNNVIKDFSLNEYVCLCCMFFTKKV 324
C+ +N++ D S N+ LC + F ++V
Sbjct: 134 CLVDNIVVDISFNQVGGLCTLCFLEEV 160
>01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078
Length = 455
Score = 26.2 bits (55), Expect = 8.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 87 HFEKKLSKNINFNPRYGCKFFIL--CFFLCRSR 179
+F +KL N GC+FF+L C F C S+
Sbjct: 325 NFGRKLCLRAGNNDACGCRFFLLGCCRFSCLSQ 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,808,051
Number of Sequences: 37544
Number of extensions: 150532
Number of successful extensions: 266
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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