Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D09
         (370 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-3|CAB60972.1|  718|Caenorhabditis elegans Hypothetical ...    29   0.79 
U80023-15|AAG24046.1|  343|Caenorhabditis elegans Serpentine rec...    28   2.4  
AF045645-2|AAC02609.1|  299|Caenorhabditis elegans Hypothetical ...    28   2.4  
AC024776-20|AAK68473.2|  460|Caenorhabditis elegans Nuclear horm...    27   3.2  
AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical ...    27   4.2  
U39851-5|AAZ32802.1|  408|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U39851-4|AAZ32803.1|  572|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U39851-3|AAZ32804.1|  563|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical...    27   5.5  
AF016443-10|AAC24276.4|  325|Caenorhabditis elegans Serpentine r...    27   5.5  

>AL132904-3|CAB60972.1|  718|Caenorhabditis elegans Hypothetical
           protein Y111B2A.3 protein.
          Length = 718

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 296 KQTYSLREKSFITLLVTHPKDWLIQFGCKEYFYFLTVEE 180
           KQ +    KS++T  V     W ++F C  +F  L VE+
Sbjct: 352 KQPFDDEAKSYLTSEVLRKFPWPVEFACSTWFKSLEVEK 390


>U80023-15|AAG24046.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein200 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 335 W*MTTFFVKNIQHKQTYSLREKSFITLLV 249
           W   +  +KN   ++T++L+ K FITLL+
Sbjct: 221 WNSISQLMKNTMSRRTFNLQRKFFITLLI 249


>AF045645-2|AAC02609.1|  299|Caenorhabditis elegans Hypothetical
           protein K02D7.5 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 79  RYVILKKNYLKISILIPDMVVNFLYCVFFYV 171
           RY +LK +Y+ I + +  +     YCVFF +
Sbjct: 57  RYGLLKMDYVMIIVNVVGVACMAFYCVFFLI 87


>AC024776-20|AAK68473.2|  460|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 274 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +1

Query: 202 KYSLHPN*ISQSLGCVTNNVIKDFSLNEYVCL---CCMFFTKKVVIYHPVGMVKVMF 363
           K  LHP  +++SL CV     K+  ++E+ C      +  T++ V  H V  VK ++
Sbjct: 297 KAKLHPLFVNESLNCV-GYPFKNLQIDEHECAVLKTILLLTQQGVFKHCVNEVKHLY 352


>AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical
           protein Y105C5A.1 protein.
          Length = 767

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 96  KKLSKNINFNPRYGC 140
           +KL  N+ F PRYGC
Sbjct: 494 EKLCNNLKFEPRYGC 508


>U39851-5|AAZ32802.1|  408|Caenorhabditis elegans Hypothetical
           protein C23G10.7a protein.
          Length = 408

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 219 WM*GILLFSNSRRTLIYIEKNTI*KIYNHI 130
           W+ GI L  +SR+T   ++K +  K Y HI
Sbjct: 170 WLKGIDLSKSSRKTNSLLDKESYIKTYRHI 199


>U39851-4|AAZ32803.1|  572|Caenorhabditis elegans Hypothetical
           protein C23G10.7b protein.
          Length = 572

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 219 WM*GILLFSNSRRTLIYIEKNTI*KIYNHI 130
           W+ GI L  +SR+T   ++K +  K Y HI
Sbjct: 170 WLKGIDLSKSSRKTNSLLDKESYIKTYRHI 199


>U39851-3|AAZ32804.1|  563|Caenorhabditis elegans Hypothetical
           protein C23G10.7c protein.
          Length = 563

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 219 WM*GILLFSNSRRTLIYIEKNTI*KIYNHI 130
           W+ GI L  +SR+T   ++K +  K Y HI
Sbjct: 170 WLKGIDLSKSSRKTNSLLDKESYIKTYRHI 199


>AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical
           protein Y73F8A.3 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 70  LLFRYVILKKNYLKISILIPDMVVNFLYCVFFYVDQG 180
           LL  + I    Y  +++L+P  +  + YC+F  + +G
Sbjct: 43  LLLSFSIFNMVYSILNVLVPIDIHTYSYCMFLIIKRG 79


>AF016443-10|AAC24276.4|  325|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 9 protein.
          Length = 325

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 143 IFYIVFFSM*IKVLLLLENKSIPYIQTELASL 238
           +F I FF+  + V L+L+N  IP     +AS+
Sbjct: 222 VFSIGFFNTIVNVCLILDNYDIPVTYKNIASV 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,642,080
Number of Sequences: 27780
Number of extensions: 173493
Number of successful extensions: 420
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)