Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D08
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.1  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   6.7  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    24   8.9  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    24   8.9  

>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 331 ENNETQQDYNAPDLH 375
           E  E  QDYN P+LH
Sbjct: 55  ERKEDTQDYNEPELH 69


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 286 TRCILITSAFHVSFHENNETQQDYNAPDLHCETLVPNSARGSDIT 420
           TR ++ TS  +    E+NE   D  A  +H  T+   S+R SD++
Sbjct: 526 TRTVIPTSVKNF-IAEDNEYFDDELAGIIHSPTVSTRSSRSSDVS 569


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 236 YECELRGAHVGSSPQLGPGVYSSLRHFTSAFTKIMR 343
           Y   L G     SP++     +S+ HF SA +K+++
Sbjct: 234 YTYNLLGKSTDESPKITISAGTSMSHFPSASSKLIQ 269


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 292 CILITSAFHVSFHENNET 345
           C+L    FH + HE +ET
Sbjct: 120 CVLCAPCFHATNHEGHET 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,726,752
Number of Sequences: 5004
Number of extensions: 32609
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)