Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D07
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   0.82 
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    27   1.1  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   4.4  
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz...    25   5.8  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     25   5.8  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    25   5.8  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    24   7.7  
SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom...    24   7.7  

>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 46  SVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAITPKLIAPKEEPQ 189
           SV +P+ D + DDSE+ E  T+   + E  A+  A+     A  EEP+
Sbjct: 382 SVDEPQKDSK-DDSEKVEKETEVERKEENEAEAEAVFDDWEAALEEPE 428


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +3

Query: 111 RSLRNRSYCRHFSHHSKTNCT----ERRTTEGRLHWCTNMEGIYKVV 239
           R  R RS    FSHHS+T+ +      R++ G L     + GIY  V
Sbjct: 167 RERRERSISPSFSHHSRTSISGQSHSSRSSRGPLLNAPTLYGIYSGV 213


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 384 ISNVFSFKNTCDIY*SIRFN*YIDRSLVAT 295
           I NVF+  + CD+Y    F  Y++ S V T
Sbjct: 318 IGNVFNSISGCDLYSLSNFLLYLENSCVIT 347


>SPBC342.04 |||adhesion regulating molecule protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 291

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 28  EWPKRNSVQQPKPDVRLDDSE 90
           +W KRN ++ P+ D+ +  SE
Sbjct: 42  QWAKRNDLENPEDDIIVFSSE 62


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
 Frame = +1

Query: 91  REEFSTDDPLETEVTADT---LAITPKLIAPKEEPQK--VDYTGAQIWKVSTKSSGIRVT 255
           + +F+TD  L TEVT  T   + +  K +  K  P    ++    Q W    K      T
Sbjct: 278 KNQFATDFTLSTEVTLSTPSPINLYEKELGIKHTPNSKIINQISLQQWVKQKKVQDAWRT 337

Query: 256 IGRLRRRNLISTWGGNQTSIDILVKPNTLVNVTRIFKRENIGY 384
           I    + N  +   G     D L    T   ++ + K   +GY
Sbjct: 338 IAEREKLNAHALEVGTWAFCDFLF-GRTYNVISSMSKARKLGY 379


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 259 GRLRRRNLISTWGGNQTSID 318
           G L+  NLI+ W  N+ +ID
Sbjct: 178 GHLKLSNLIAVWDNNKITID 197


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +1

Query: 34  PKRNSVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAITPK 162
           PK+   ++P P  R  D ++ +  +++ +E +V   T+    K
Sbjct: 150 PKKPEAKEPSPKSRKTDEDKHDKDSNEKIE-DVNEKTIKFADK 191


>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 161

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 103 STDDPLETEVTADT 144
           +T  PLETEV ADT
Sbjct: 18  ATSTPLETEVVADT 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.132    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,671,726
Number of Sequences: 5004
Number of extensions: 32283
Number of successful extensions: 57
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)