Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D07
(403 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0491 + 3506425-3506427,3506610-3506810,3507517-3507732 31 0.45
03_01_0046 - 384444-384460,384649-384770,385144-385301,385379-38... 28 3.2
03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467 27 4.2
12_02_0364 - 18020249-18020737,18021075-18021502,18021563-180216... 27 5.6
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 27 7.3
02_03_0190 + 16188329-16188514,16188552-16188885,16190275-161907... 27 7.3
11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262... 26 9.7
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 26 9.7
01_01_0575 - 4271910-4272371,4272923-4272928,4272999-4273174,427... 26 9.7
>06_01_0491 + 3506425-3506427,3506610-3506810,3507517-3507732
Length = 139
Score = 30.7 bits (66), Expect = 0.45
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 283 ISTWGGNQT-SIDILVKPNTLVNVT 354
I WGGN S+DI V PN+L NVT
Sbjct: 8 IGPWGGNGGGSVDISVPPNSLKNVT 32
>03_01_0046 -
384444-384460,384649-384770,385144-385301,385379-385479,
385748-385823,385983-386093,386165-386356,386729-387024,
388299-388497
Length = 423
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -3
Query: 359 IRVTFTRVLGLTSISIEVWLPPHVEIRFRLRSLPIVTRIPDDFVDTFHI 213
+R+ R+ LTS + + L P V++ R + I + P++ D FH+
Sbjct: 175 VRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRDIFHL 223
>03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467
Length = 640
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 37 KRNSVQQPKPDVRLDDSEREEFSTDDPLE 123
K+ +PKP DD E +E DD LE
Sbjct: 134 KQKKAAEPKPPRDTDDDEDDEEEADDDLE 162
>12_02_0364 -
18020249-18020737,18021075-18021502,18021563-18021649,
18022059-18022192,18023051-18023053,18023129-18023187,
18023429-18023887
Length = 552
Score = 27.1 bits (57), Expect = 5.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 243 YPCYYW*TAKAKPNFNVGWQPNF 311
YPC+ W K F+ GW N+
Sbjct: 495 YPCFMWICIKKPERFSSGWYLNW 517
>12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 26.6 bits (56), Expect = 7.3
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +1
Query: 124 TEVTADTLAITPKLIAPKEEPQKVDYTGAQIWKVSTKSSGIRVTIG----RLRRRNLIST 291
TE + L P+LI +++P + + S SS + + R + S
Sbjct: 799 TETLREYLKNMPRLIMQQQKPASSESGSSDSGSASDSSSSESESSSDESDKKRSKRRKSN 858
Query: 292 WGGNQTSIDILVKPNTLVNVTRIF---KRENI 378
W G Q + +VN+TRIF KR NI
Sbjct: 859 WHGYQGRFVDMQVYGDIVNITRIFCSIKRCNI 890
>02_03_0190 +
16188329-16188514,16188552-16188885,16190275-16190745,
16191055-16191249,16191519-16191643,16192082-16192142,
16192774-16193023,16193129-16193279,16193594-16193902
Length = 693
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 4 RGELQPGQEWPKRNSVQQPKPDVRLDDSEREEFSTD 111
+G + GQE + + K D+ +DD +RE+ + D
Sbjct: 437 KGLMPDGQEIAVKRLAKGSKQDLNIDDKKREQLAWD 472
>11_06_0120 -
20324794-20325204,20325416-20325545,20326172-20326255,
20326584-20326823,20327418-20327498,20327761-20328113
Length = 432
Score = 26.2 bits (55), Expect = 9.7
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +1
Query: 43 NSVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAITP-KLIAPKE 180
+ V P D DDS E T D + +V D TP K PK+
Sbjct: 364 HQVNNPPDDSDNDDSRSESVVTSDSQDCQVNLDIGCATPSKPTGPKK 410
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 34 PKRNSVQQPKPDVRLDDS 87
P R QQP PD LDDS
Sbjct: 218 PPRRQRQQPHPDYALDDS 235
>01_01_0575 -
4271910-4272371,4272923-4272928,4272999-4273174,
4274150-4275299
Length = 597
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 43 NSVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAITPKLIAPKEEPQKVDYTGAQ 213
N+ K + +D+ E EE +DP E ++ A ++ +E+P++V+ G +
Sbjct: 240 NATATEKKEEHVDEEEEEE--EEDPEEMVPASEEEADAEEVEKEEEDPEEVEKEGGE 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.132 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,477,704
Number of Sequences: 37544
Number of extensions: 198549
Number of successful extensions: 435
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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