Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D07
(403 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom... 40 9e-04
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z66567-8|CAA91494.1| 402|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z66561-9|CAA91462.1| 402|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z92789-6|CAB07218.2| 303|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z75714-6|CAE54930.1| 532|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z75714-5|CAB00065.2| 581|Caenorhabditis elegans Hypothetical pr... 28 2.9
AC024880-2|AAF60914.4| 665|Caenorhabditis elegans Hypothetical ... 28 2.9
AC024880-1|AAR12985.1| 634|Caenorhabditis elegans Hypothetical ... 28 2.9
AF000261-11|AAB52931.1| 268|Caenorhabditis elegans Hypothetical... 27 3.8
U97403-6|AAB52471.2| 583|Caenorhabditis elegans Hypothetical pr... 26 8.8
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 26 8.8
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 26 8.8
AC090999-19|AAK26156.1| 575|Caenorhabditis elegans Hypothetical... 26 8.8
AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cel... 26 8.8
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 26 8.8
>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform a protein.
Length = 1273
Score = 39.5 bits (88), Expect = 9e-04
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 13 LQPGQEWPKRNSVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAITPKLIAPKEEP 186
L P + WP +++ PK + LD S+ EF + + +VT + K+ +P E P
Sbjct: 678 LSPRRVWPADQNIEHPKAETLLDTSDPMEFKEEPVIRYDVTPKVEPVIEKIKSPVESP 735
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 52 QQPKPDVRLDDSEREEFSTDDPLETEVTADTLA-ITPKLIAPKEEPQKVDYTGAQIWKVS 228
Q KPD +L D+ VT +A + + APKE P + A+ WK
Sbjct: 1893 QGKKPDPQLTSPRDTRCMMDEGRRENVTIVPVASLIGAVEAPKEAPSQRAAEAAEDWKAY 1952
Query: 229 TKS 237
TKS
Sbjct: 1953 TKS 1955
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 52 QQPKPDVRLDDSEREEFSTDDPLETEVTADTLA-ITPKLIAPKEEPQKVDYTGAQIWKVS 228
Q KPD +L D+ VT +A + + APKE P + A+ WK
Sbjct: 1893 QGKKPDPQLTSPRDTRCMMDEGRRENVTIVPVASLIGAVEAPKEAPSQRAAEAAEDWKAY 1952
Query: 229 TKS 237
TKS
Sbjct: 1953 TKS 1955
>Z66567-8|CAA91494.1| 402|Caenorhabditis elegans Hypothetical
protein ZK455.6 protein.
Length = 402
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 235 SSGIRVTIGRLRRRNLISTWGGNQTSIDILVKPNTLVNVTRIFKRE 372
+ G+++ + +L+R ++ G SID L PN +++ IFK E
Sbjct: 76 NEGMKIELVQLQRDSIGRKKSGASISIDPLFTPNVASSLSAIFKNE 121
>Z66561-9|CAA91462.1| 402|Caenorhabditis elegans Hypothetical
protein ZK455.6 protein.
Length = 402
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 235 SSGIRVTIGRLRRRNLISTWGGNQTSIDILVKPNTLVNVTRIFKRE 372
+ G+++ + +L+R ++ G SID L PN +++ IFK E
Sbjct: 76 NEGMKIELVQLQRDSIGRKKSGASISIDPLFTPNVASSLSAIFKNE 121
>Z92789-6|CAB07218.2| 303|Caenorhabditis elegans Hypothetical
protein H02I12.4 protein.
Length = 303
Score = 27.9 bits (59), Expect = 2.9
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 283 ISTWGGNQTS--IDILVKPNTLVNVTRIFKRENIGYEVIIE 399
IST N+ S ++++KPN + NVTRI N Y +II+
Sbjct: 40 ISTDVQNEESNVFEVILKPNVVFNVTRIPVDFNKTYNLIIK 80
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical
protein F26H11.2c protein.
Length = 2266
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 1 ARGELQPGQEWPKRNSVQQPKPDVRL--DDSEREEFSTDD 114
ARG + P+R S+++ + D+ +DSE EE S+DD
Sbjct: 152 ARGRPKKNPTPPRRKSLKRQEEDIIYMDEDSEEEEESSDD 191
>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical
protein F26H11.2b protein.
Length = 1693
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 1 ARGELQPGQEWPKRNSVQQPKPDVRL--DDSEREEFSTDD 114
ARG + P+R S+++ + D+ +DSE EE S+DD
Sbjct: 152 ARGRPKKNPTPPRRKSLKRQEEDIIYMDEDSEEEEESSDD 191
>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical
protein F26H11.2a protein.
Length = 1691
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 1 ARGELQPGQEWPKRNSVQQPKPDVRL--DDSEREEFSTDD 114
ARG + P+R S+++ + D+ +DSE EE S+DD
Sbjct: 152 ARGRPKKNPTPPRRKSLKRQEEDIIYMDEDSEEEEESSDD 191
>Z75714-6|CAE54930.1| 532|Caenorhabditis elegans Hypothetical
protein ZC434.9b protein.
Length = 532
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 316 DILVKPNTLVNVTRIFKRENIGYEVIIED 402
DI+V + + + + K NI Y+VIIED
Sbjct: 74 DIMVDEDRMEWLDSVLKNSNISYDVIIED 102
>Z75714-5|CAB00065.2| 581|Caenorhabditis elegans Hypothetical
protein ZC434.9a protein.
Length = 581
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 316 DILVKPNTLVNVTRIFKRENIGYEVIIED 402
DI+V + + + + K NI Y+VIIED
Sbjct: 74 DIMVDEDRMEWLDSVLKNSNISYDVIIED 102
>AC024880-2|AAF60914.4| 665|Caenorhabditis elegans Hypothetical
protein Y97E10AR.2a protein.
Length = 665
Score = 27.9 bits (59), Expect = 2.9
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +1
Query: 13 LQPGQEWPKRNSVQQPKPDVRLDDSEREEF--STDDPLETEVTADTLAITPKLIAPKEEP 186
+ QE + V D ++D + EE+ +T P + T++ +A P APK E
Sbjct: 233 ISASQESGETTDVLLELEDDNIEDVQVEEYEETTKSPTVSTSTSEPMAAAPITDAPKTEN 292
Query: 187 QKVDYTGAQIWKVSTKSS 240
+YT IW T S
Sbjct: 293 VSRNYTRI-IWDRRTVRS 309
>AC024880-1|AAR12985.1| 634|Caenorhabditis elegans Hypothetical
protein Y97E10AR.2b protein.
Length = 634
Score = 27.9 bits (59), Expect = 2.9
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +1
Query: 13 LQPGQEWPKRNSVQQPKPDVRLDDSEREEF--STDDPLETEVTADTLAITPKLIAPKEEP 186
+ QE + V D ++D + EE+ +T P + T++ +A P APK E
Sbjct: 183 ISASQESGETTDVLLELEDDNIEDVQVEEYEETTKSPTVSTSTSEPMAAAPITDAPKTEN 242
Query: 187 QKVDYTGAQIWKVSTKSS 240
+YT IW T S
Sbjct: 243 VSRNYTRI-IWDRRTVRS 259
>AF000261-11|AAB52931.1| 268|Caenorhabditis elegans Hypothetical
protein F19B10.1 protein.
Length = 268
Score = 27.5 bits (58), Expect = 3.8
Identities = 23/60 (38%), Positives = 31/60 (51%)
Frame = +1
Query: 112 DPLETEVTADTLAITPKLIAPKEEPQKVDYTGAQIWKVSTKSSGIRVTIGRLRRRNLIST 291
D ET++ T PK AP E D T +Q VST SS I V+ R +RR ++S+
Sbjct: 110 DSQETKIVWKTSPAKPK--APPVEDDPTDPTDSQ---VSTVSSIIPVSSPRGKRRIVVSS 164
>U97403-6|AAB52471.2| 583|Caenorhabditis elegans Hypothetical
protein T10E9.3 protein.
Length = 583
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 28 EWPKRNSVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAITPKLIAPKEEPQKVDYT 204
E PK+ + K D + ++ T + L +V L +TPK+ EEP+ +T
Sbjct: 362 ETPKKTTQPLVKGDEDIIEASGVTVPTKEALINDVEGSGLPVTPKI--ENEEPKSTPHT 418
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 58 PKPDVRLDDSEREEFSTDDP-LETEVTADTLAI-TPKLIAPKEE 183
P+P + +D E E+ +TD P + E+ AD A P+ AP +E
Sbjct: 24 PEPILVIDMDEDEDVTTDGPESQEELAADAPAPGAPEASAPAQE 67
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 58 PKPDVRLDDSEREEFSTDDP-LETEVTADTLAI-TPKLIAPKEE 183
P+P + +D E E+ +TD P + E+ AD A P+ AP +E
Sbjct: 61 PEPILVIDMDEDEDVTTDGPESQEELAADAPAPGAPEASAPAQE 104
>AC090999-19|AAK26156.1| 575|Caenorhabditis elegans Hypothetical
protein Y82E9BR.16a protein.
Length = 575
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 190 KVDYTGAQIWKVSTKSSGIRVTI 258
KV+YT Q W+++ S I+ TI
Sbjct: 114 KVEYTAVQRWEITCDRSWIKATI 136
>AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform b protein.
Length = 512
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 58 PKPDVRLDDSEREEFSTDDP-LETEVTADTLAI-TPKLIAPKEE 183
P+P + +D E E+ +TD P + E+ AD A P+ AP +E
Sbjct: 61 PEPILVIDMDEDEDVTTDGPESQEELAADAPAPGAPEASAPAQE 104
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 58 PKPDVRLDDSEREEFSTDDP-LETEVTADTLAI-TPKLIAPKEE 183
P+P + +D E E+ +TD P + E+ AD A P+ AP +E
Sbjct: 61 PEPILVIDMDEDEDVTTDGPESQEELAADAPAPGAPEASAPAQE 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.312 0.132 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,314,447
Number of Sequences: 27780
Number of extensions: 186220
Number of successful extensions: 466
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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