Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_D07
(403 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 22 3.0
M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee homeobox-... 21 5.3
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 5.3
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 6.9
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 20 9.2
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 20 9.2
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 20 9.2
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 20 9.2
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 20 9.2
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 20 9.2
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 20 9.2
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 20 9.2
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 20 9.2
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 20 9.2
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 20 9.2
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 21.8 bits (44), Expect = 3.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 11 NYSPGKNGQNETLYNNLN 64
NY+ N N+ LY N+N
Sbjct: 96 NYNNNYNNYNKKLYYNIN 113
>M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E30. ).
Length = 109
Score = 21.0 bits (42), Expect = 5.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 356 RVTFTRVLGLTSISIEVW 303
R +R LGLT I++W
Sbjct: 50 RQQLSRDLGLTEAQIKIW 67
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.0 bits (42), Expect = 5.3
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -3
Query: 332 GLTS-ISIEVWLPPHVEIRFR 273
GL++ I I V PPH EI+ +
Sbjct: 764 GLSAVIFISVQAPPHFEIKLK 784
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 20.6 bits (41), Expect = 6.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 40 RNSVQQPKPDVRLDDSEREEF 102
RNS + P P + D SE E +
Sbjct: 1334 RNSRRTPVPRLAQDSSEDESY 1354
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 20.2 bits (40), Expect = 9.2
Identities = 9/39 (23%), Positives = 18/39 (46%)
Frame = +1
Query: 184 PQKVDYTGAQIWKVSTKSSGIRVTIGRLRRRNLISTWGG 300
P +V + ++T++SGI ++ + I W G
Sbjct: 271 PARVSLGVTTLLTMATQTSGINASLPPVSYTKAIDIWTG 309
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 20.2 bits (40), Expect = 9.2
Identities = 9/39 (23%), Positives = 18/39 (46%)
Frame = +1
Query: 184 PQKVDYTGAQIWKVSTKSSGIRVTIGRLRRRNLISTWGG 300
P +V + ++T++SGI ++ + I W G
Sbjct: 271 PARVSLGVTTLLTMATQTSGINASLPPVSYTKAIDIWTG 309
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.2 bits (40), Expect = 9.2
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +2
Query: 11 NYSPGKNGQNETLYNNLNRM 70
NYS N N YNN ++
Sbjct: 90 NYSNYNNYNNNNNYNNYKKL 109
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 20.2 bits (40), Expect = 9.2
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +2
Query: 11 NYSPGKNGQNETLYNNLNRM 70
NYS N N YNN ++
Sbjct: 90 NYSNYNNYNNNNNYNNYKKL 109
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.2 bits (40), Expect = 9.2
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +2
Query: 11 NYSPGKNGQNETLYNNLNRM 70
NYS N N YNN ++
Sbjct: 90 NYSNYNNYNNNNNYNNYKKL 109
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.2 bits (40), Expect = 9.2
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +2
Query: 11 NYSPGKNGQNETLYNNLNRM 70
NYS N N YNN ++
Sbjct: 90 NYSNYNNYNNNNNYNNYKKL 109
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.2 bits (40), Expect = 9.2
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +2
Query: 11 NYSPGKNGQNETLYNNLNRM 70
NYS N N YNN ++
Sbjct: 90 NYSNYNNYNNNNNYNNYKKL 109
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.2 bits (40), Expect = 9.2
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +2
Query: 11 NYSPGKNGQNETLYNNLNRM 70
NYS N N YNN ++
Sbjct: 90 NYSNYNNYNNNNNYNNYKKL 109
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.2 bits (40), Expect = 9.2
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +2
Query: 11 NYSPGKNGQNETLYNNLNRM 70
NYS N N YNN ++
Sbjct: 90 NYSNYNNYNNNNNYNNYKKL 109
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.2 bits (40), Expect = 9.2
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +2
Query: 11 NYSPGKNGQNETLYNNLNRM 70
NYS N N YNN ++
Sbjct: 90 NYSNYNNYNNNNNYNNYKKL 109
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 20.2 bits (40), Expect = 9.2
Identities = 7/20 (35%), Positives = 10/20 (50%)
Frame = +2
Query: 11 NYSPGKNGQNETLYNNLNRM 70
NY+ N N YNN ++
Sbjct: 333 NYNNNYNNYNNNNYNNYKKL 352
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.312 0.132 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,798
Number of Sequences: 438
Number of extensions: 2251
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)
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